Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03052 and BPUM_1170
See
Amino acid alignment /
Visit
BSNT_03052 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_03052___yogA.1.24716.seq
# -bsequence dna-align/BPUM_1170___gutB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03052___yogA-BPUM_1170___gutB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03052___yogA-BPUM_1170___gutB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03052___yogA
# 2: BPUM_1170___gutB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity: 583/1281 (45.5%)
# Similarity: 583/1281 (45.5%)
# Gaps: 540/1281 (42.2%)
# Score: 958.5
#
#
#=======================================
BSNT_03052___ 1 ATGAA---AGCTGTAATTCACAACGGAAAAGCCGGTCTTCTGGGGTTATC 47
||||| ||||||..|| |.|||| ||
BPUM_1170___g 1 ATGAAATCAGCTGTCTTT-----------------TATTCT-------TC 26
BSNT_03052___ 48 AGTTCAGGACGTTC--CATCAACA----AA---GCCTGGATACGGAGA-G 87
|| |||||.||| .||.|..| || |||||.|...||.|| |
BPUM_1170___g 27 AG---AGGACATTCGGTATGAGAAGCGGAACCGGCCTGCAATTGGCGATG 73
BSNT_03052___ 88 GTAAAGGTTAAATTAA-AATCTGCAGGCCTGAATCATCGTGACTTGTTTC 136
.|.|| |||..||||| || |||.|||.|| || .|
BPUM_1170___g 74 ATGAA-GTTCTATTAAGAA--TGCGGGCATG------CG---------GC 105
BSNT_03052___ 137 TTATGAAAAACAAATCTGAACAAGATCCT-CACATGATAC--TGGGTTCT 183
|||||....|||.||.|..||||| .|| |||||||.|| ||..|.||
BPUM_1170___g 106 TTATGTGGCACAGATATTTACAAG--GCTACACATGAGACGGTGCCTCCT 153
BSNT_03052___ 184 G--ACGG--CGCGGGTATCATCGAA---------GAGATTGGTGAA---G 217
| |||| |..|||.| |||| ||.||||.|||| |
BPUM_1170___g 154 GGAACGGTACTAGGGCA----CGAAATCGCTGGTGATATTGTTGAAACTG 199
BSNT_03052___ 218 G------CGTGAAAAATGT---TACTGTTCAGACAG-----AAGTAG--- 250
| .||||.||||.| .||.| .|||||| |.||.|
BPUM_1170___g 200 GAAAGTATGTGACAAATATAAAAACGG--GAGACAGGGTTTATGTTGCGC 247
BSNT_03052___ 251 -TCAT---------TTTCCC---GACATTGAACTG-------GGATTTGA 280
.||| |||.|| |||.|| || ||||||.|
BPUM_1170___g 248 ACCATGTACCTTGCTTTACCTGTGACTTT----TGTCAAAGAGGATTTTA 293
BSNT_03052___ 281 CAGAAAATG--------TTCCACCT-GTACCTGAGATTCTGGGAGGTCCT 321
||.||..|| ||.||.|| .||.|..||||.|.||
BPUM_1170___g 294 CACAATGTGTCCGCAGTTTTCAGCTACTAACGTAGATCCAGG-------- 335
BSNT_03052___ 322 TCGGACGGAACACTTGCTGAATAT----GTGATCATTCCTTCACAAAATG 367
||| |.||.|.||.||| |.|..|.|.|||| |.|||
BPUM_1170___g 336 -----CGG---ATTTTCAGAGTATATCCGCGTACCTGCCTT----ACATG 373
BSNT_03052___ 368 -CAATCAAAAAACCTGCTTATTTATCTTGGGAAGAAGCGGGCGTTTTACC 416
|||.||.|.|| |||| .||||...||..|.||.
BPUM_1170___g 374 TCAAACACACAA---------------TGGG--CAAGCTCCCGAATGACG 406
BSNT_03052___ 417 TTTATCCGCTTTAACCGCATATCGGGCCTTGTTTACAAAGGGGCAA---- 462
| |.||||| |.|| |||||||.|
BPUM_1170___g 407 T--------------CTCATAT-GAGC----------AAGGGGCGATGGT 431
BSNT_03052___ 463 -----------------------------TTAAAAAAAGGCGAGCATCTA 483
||.|| ||||||.||.
BPUM_1170___g 432 GGAGCCAGTCGCCTGCTGCCTGCACGGGTTTGAA------CGAGCACCTG 475
BSNT_03052___ 484 TTGATACCCGG------------CATC----------GGCA-----GCGG 506
||.|| ||.|| .||| |||| ||
BPUM_1170___g 476 TTCAT-CCAGGAGATTCTGTGTTGATCCTTGGAGCAGGGCAAATTGGC-- 522
BSNT_03052___ 507 TGTA-GCAACCTAC-GCT---------TTATTTATGGCTAAGGCGATTGG 545
|||| .||| |||| ||| ||||| ||||| |
BPUM_1170___g 523 TGTATTCAA-CTACAGCTTGCCAAACATTATT--TGGCT----------G 559
BSNT_03052___ 546 GGCAACAGTAAGCGTGACCTCCCGCA-GTGAGGAGAAAAGAAAAAAGGC- 593
|| |.|.||| ||| |..||.| ||| ||.||.||..|||
BPUM_1170___g 560 GG--AAAATAA---TGA--TAACGGATGTG------AATGAGAACCGGCT 596
BSNT_03052___ 594 GCT--------GAAA-TTAGGTGCTGATTACGCATTTGA--CAGCTAC-- 630
||| |||| ||||||||.||...|||.|||.| ||||..|
BPUM_1170___g 597 GCTACAAGCGAGAAATTTAGGTGCAGACGTCGCTTTTCATCCAGCCTCTG 646
BSNT_03052___ 631 AGCAATTG-GGATGAGCAGTTGC---AGGGAAA-AAAGGCGGATGTTGTT 675
||| .|| |||.||.|.|.| | ||.|||| ||| ||||
BPUM_1170___g 647 AGC--CTGTGGAAGACCGGGT-CATGAGAGAAACAAA--CGGA------- 684
BSNT_03052___ 676 CTTGACAGCATAGGACCTGCCCTCTTTTCGGAATACTTCCGCCATGTAAA 725
|..|||.|.|.||||.|| |.||.||| |||
BPUM_1170___g 685 ---------AAGGGAGCAGACCTCGTT----ATTATTTC-----TGT--- 713
BSNT_03052___ 726 ACCAAATGGCCGTATTGTCAGCTTT-----GGGGCAAGC---TCA----- 762
|||..||| ||..||||| | |||| |||
BPUM_1170___g 714 ------TGGAAGTA--GTGCGCTTTTAAAAG----AAGCGTTTCAAGCAG 751
BSNT_03052___ 763 ---------GGGGA-------TAAT-----CTCAGTTTTCC----GGTG- 786
|.||| ||.| |||| |||||| ||.|
BPUM_1170___g 752 TAGCGAGAGGCGGAACGATTTTAGTGTTTGCTCA-TTTTCCAAAGGGAGA 800
BSNT_03052___ 787 CGTTCTCTATTCTTTCCTCAGGTCAATGTTTTGGGAACCTCGATG----G 832
|| ||||.|||| |..|.|.||.||.||| ||..|||| |
BPUM_1170___g 801 CG-TCTCCATTC---CGGCTGATCGATTTTT------CCATGATGAAGTG 840
BSNT_03052___ 833 GAAGCGGTGAGG----AATT--TCAAGCTATGCTCGCTTTCATTGACAAA 876
.|||.||| ||| .||| ||| .||.|| |.|||.| |
BPUM_1170___g 841 AAAGTGGT-AGGCGCCTATTCCTCA---CATCCT---TATCACT-----A 878
BSNT_03052___ 877 CAT--AAGCTGCGGCCTGTAATTGACCGGATATATCCTTT--AGA----- 917
|.| |||| |||..|| |||| |||
BPUM_1170___g 879 CCTCGAAGC-----CCTTGAA---------------CTTTTAAGAGCAAA 908
BSNT_03052___ 918 --------------AAAAGCAT-GTGAAGCAT--------AT-------- 936
||||| || ||||.|||| ||
BPUM_1170___g 909 AGTGGTCAACACAGAAAAG-ATGGTGACGCATCGTTATCCATTAAGTCAG 957
BSNT_03052___ 937 -----------AAAAGAATGCAGGAAGGCA----------GACAGTTTGG 965
||.||||||| |.|||.|| ||.|||.|..
BPUM_1170___g 958 CTCCTGCAGGCAATAGAATGC-GCAAGACACCCTGAAGGTGATAGTGTCA 1006
BSNT_03052___ 966 AAA-CATCGGGATCGTA-----ATGGAATAA 990
||| ||| ||| ||| || ||||.|
BPUM_1170___g 1007 AAATCAT---GAT-GTATCCAGAT-GAATGA 1032
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.