Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02172 and BPUM_1161
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_02172___pit.1.24716.seq
# -bsequence dna-align/BPUM_1161___pit.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02172___pit-BPUM_1161___pit.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02172___pit-BPUM_1161___pit.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02172___pit
# 2: BPUM_1161___pit
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 749/1003 (74.7%)
# Similarity: 749/1003 (74.7%)
# Gaps: 5/1003 ( 0.5%)
# Score: 2718.0
#
#
#=======================================
BSNT_02172___ 1 ATGGATATTCTATTAATATTAACGATACTAATAGTCATTTGTGCTCTGGC 50
|||||||...||.|.||..|.||.|||.|.||.|||||||||||.||.||
BPUM_1161___p 1 ATGGATACATTACTCATCCTTACCATATTTATTGTCATTTGTGCACTTGC 50
BSNT_02172___ 51 GTTTGATTTCATCAACGGGTTTCATGATACGGCAAACGCAATTGCGACTT 100
.|||||||||||||||||.|||||.|||||.|||||.||.|||||.||||
BPUM_1161___p 51 TTTTGATTTCATCAACGGATTTCACGATACAGCAAATGCCATTGCCACTT 100
BSNT_02172___ 101 CAGTATCAACAAAAGCGTTGAAACCGCGCCATGCCATTATATTGGCGGCT 150
|.||.||||||||.|||||.||.||..|.|||||.|||||..||||.||.
BPUM_1161___p 101 CGGTTTCAACAAAGGCGTTAAAGCCTAGACATGCTATTATTATGGCAGCG 150
BSNT_02172___ 151 GTGATGAACTTTATCGGAGCAATGACGTTTACGGGTGTTGCCAAAACCAT 200
.|.||||||||..|.|||||||||||.|||||.|||||.||.||..||||
BPUM_1161___p 151 TTCATGAACTTCTTAGGAGCAATGACATTTACAGGTGTGGCAAAGTCCAT 200
BSNT_02172___ 201 TACGAAAGACATCGTAGATCCTTATACGCTGGAAAATGGCTCTGTTGTCA 250
|||.||||||||||.||||||||..||.||..||||.||.|||||.||||
BPUM_1161___p 201 TACAAAAGACATCGCAGATCCTTTCACACTTCAAAACGGTTCTGTCGTCA 250
BSNT_02172___ 251 TTTTGGCTGCGCTACTCGCTGCAATTGCCTGGAACCTTATCACATGGTAC 300
||||||||||..||.|.||.||.|||.|.||||||.|..|.||.|||||.
BPUM_1161___p 251 TTTTGGCTGCATTAATTGCGGCTATTACTTGGAACTTGCTTACTTGGTAT 300
BSNT_02172___ 301 TACGGTATCCCAAGCAGCTCATCCCATGCCATCATCGGCGCTATTGCCGG 350
|||||.||.||.||.||.|||||.|||||..|.|||||..|.|||||.||
BPUM_1161___p 301 TACGGGATTCCGAGTAGTTCATCGCATGCACTGATCGGATCAATTGCAGG 350
BSNT_02172___ 351 TGCAGCCATTGCGGCAGCCGGATTTGCAGCGTTAAACTATAAGGGCTTCA 400
.||.|..|||||..|.||.||.||||..||.|||||||||..|||.||||
BPUM_1161___p 351 AGCTGTTATTGCCTCTGCTGGTTTTGGCGCTTTAAACTATTCGGGGTTCA 400
BSNT_02172___ 401 TTAAAATCATTGAAGCACTGATCCTATCACCAATTATTGCCTTTGTCCTT 450
|||||||||||.|||||||..|.||.|||||.||..|.||.||.||..|.
BPUM_1161___p 401 TTAAAATCATTCAAGCACTATTGCTTTCACCTATCCTAGCATTCGTATTG 450
BSNT_02172___ 451 GGTTTTATTCTTTATAGCATCGTTAAGCTGATTTTCAAAGACAGCAA-CT 499
||.|.|||..|.||||.|||.||.||..|.||.||.|.|.|||.||| ||
BPUM_1161___p 451 GGATATATCGTGTATACCATTGTCAAATTTATATTTAGAAACAACAATCT 500
BSNT_02172___ 500 TGGCGAAAACGAATAAGCAATTCCGCAGAGTGCAGATTGTAACAGCTGCC 549
| .|.|||||.|||||.||||||||..|.||.||.|||.||||.|||||.
BPUM_1161___p 501 T-TCCAAAACAAATAAACAATTCCGTCGTGTTCAAATTTTAACTGCTGCA 549
BSNT_02172___ 550 CTGCAATCGTATACACACGGAACAAACGATGCGCAAAAAGCAATGGGAAT 599
||.|||||||||||.||||||||||||||||||||||||||.||||||||
BPUM_1161___p 550 CTACAATCGTATACCCACGGAACAAACGATGCGCAAAAAGCGATGGGAAT 599
BSNT_02172___ 600 TATCACAATGGCTCTCATCACAGCGAATTTACATACTTCTGCTAATGATA 649
|||.||.||||||.|.||..|||..|||||.|||||..|.| |.||.|
BPUM_1161___p 600 TATTACGATGGCTTTAATTGCAGGTAATTTGCATACAACAG---ACGACA 646
BSNT_02172___ 650 TTCCTACCTGGGTGCAATTCGCCTGCGCGACAGCCATGGGTCTCGGAACA 699
|||||..||||||.||.|||.|.||.|||...||.|||||.||.||.||.
BPUM_1161___p 647 TTCCTTTCTGGGTACAGTTCTCTTGTGCGCTTGCAATGGGACTAGGTACT 696
BSNT_02172___ 700 TCAATCGGCGGCTGGAAAATCATCAAAACCGTTGGCGGAAAGATCATGAA 749
||.||.|||||||||||.||.||.|||||.||.|||||.||.||.|||||
BPUM_1161___p 697 TCTATTGGCGGCTGGAAGATTATTAAAACAGTCGGCGGTAAAATTATGAA 746
BSNT_02172___ 750 AATCCGCCCGGTAAACGGTGTTTCCGCTGACTTAACCGGAGCAGCCATTA 799
|||.||.||.||||||||.||.||.||.||.|||||.||.||.||.||||
BPUM_1161___p 747 AATTCGTCCAGTAAACGGAGTATCTGCCGATTTAACGGGGGCCGCTATTA 796
BSNT_02172___ 800 TTTTCGGCGCCACGTTTATTCATTTGCCGGTCAGTACAACCCACGTCATT 849
|.||.||.||.||.||||||||.||.||.||.|||||.||.|||||.||.
BPUM_1161___p 797 TCTTTGGTGCGACATTTATTCACTTACCTGTTAGTACCACTCACGTGATC 846
BSNT_02172___ 850 TCTTCATCAATTCTTGGCGTCGGTGCGTCCCACCGCGTAAAAGGCGTAAA 899
||.||.||.|||||.||.||.|||.|..|.|||.|.||||||||.|||||
BPUM_1161___p 847 TCCTCTTCTATTCTAGGTGTAGGTTCTGCACACAGAGTAAAAGGAGTAAA 896
BSNT_02172___ 900 CTGGGGTACGGCCAAGCGAATGCTCATTACATGGGTCATCACGCTTCCGA 949
|||||||||.||.||.||.|||||..|.||.|||||.|||||..|.||||
BPUM_1161___p 897 CTGGGGTACAGCAAAACGTATGCTTGTCACTTGGGTGATCACATTACCGA 946
BSNT_02172___ 950 TTTCAGCGACACTTGGTGCCATCGCCTACTTTATTTTAAATATGATATTT 999
||||||..||.||.||.||..|....||||||.|.||||||..|||..|.
BPUM_1161___p 947 TTTCAGGAACTCTCGGGGCTCTTATATACTTTGTGTTAAATGCGATTATC 996
BSNT_02172___ 1000 TAA 1002
|||
BPUM_1161___p 997 TAA 999
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