Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02167 and BPUM_1158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_02167___xlyA.1.24716.seq
# -bsequence dna-align/BPUM_1158___xlyA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02167___xlyA-BPUM_1158___xlyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02167___xlyA-BPUM_1158___xlyA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02167___xlyA
# 2: BPUM_1158___xlyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity: 617/998 (61.8%)
# Similarity: 617/998 (61.8%)
# Gaps: 202/998 (20.2%)
# Score: 1827.0
#
#
#=======================================
BSNT_02167___ 1 ATGGTTAACATTATTCAAGACTTTATTCCGGTTGGCGCAAAT---AACCG 47
|||||..|.|||..||||||.||||||||.||||| |||| |||||
BPUM_1158___x 1 ATGGTACAAATTTATCAAGATTTTATTCCAGTTGG---AAATGGAAACCG 47
BSNT_02167___ 48 TCCAGGCTACGCAATGACGCCGCTTTACATTACGGTGCACAATACAGCGA 97
.|||||.||.||.|||||.|||...||.||.||||||||.||.|||||.|
BPUM_1158___x 48 CCCAGGATATGCGATGACACCGGAGTATATAACGGTGCATAACACAGCAA 97
BSNT_02167___ 98 ATACCGCAGTAGGG-GCAGATGC---------TGCGGCCCATGCCCGCTA 137
|.||..|| .|||| |||||||| |||||| |||
BPUM_1158___x 98 ACACGTCA-AAGGGAGCAGATGCAAAAAGTCATGCGGC---------CTA 137
BSNT_02167___ 138 TTTGAAAAATCCTGATACGACGACA------AGCTGGCATTTTACAGTTG 181
|.|.|||||.| |.|||||| ||||||||.||||||||.|
BPUM_1158___x 138 TGTAAAAAAAC------CAACGACAGAGGTGAGCTGGCACTTTACAGTGG 181
BSNT_02167___ 182 ATGATACA-GAAATTTATCAGCATCTGCCTTTGAATGAAAACGGCTGGCA 230
||||| || |||||.|.||||||||||||.||.||||||||.||||||||
BPUM_1158___x 182 ATGAT-CATGAAATCTTTCAGCATCTGCCGTTAAATGAAAATGGCTGGCA 230
BSNT_02167___ 231 TGCGGGAGACGGAAATGGCAGCGGCAACCGGGCTTCTATCGGAATTGAAA 280
|||.||.||.||..||||.|..||.||||||...||.|||||.|||||||
BPUM_1158___x 231 TGCAGGGGATGGTCATGGGAATGGTAACCGGAAGTCGATCGGTATTGAAA 280
BSNT_02167___ 281 TTTGCGAAAATGCTGATGGAGATTTTGCAAAAGCAA-CAG-CAA--ATGC 326
||||.||.|||||.|||||..||||| .||||| ||| ||| ||||
BPUM_1158___x 281 TTTGTGAGAATGCAGATGGGAATTTT----CAGCAAGCAGTCAAACATGC 326
BSNT_02167___ 327 CCAGTGGCTCA-TCAAAA--CATTAATGGCTGAACATAATA-TCAGTCTC 372
.||.||||||| |||||| ..|||| .|||||||.|.| ||.| ||.
BPUM_1158___x 327 ACAATGGCTCATTCAAAAGCTGTTAA---ATGAACATCACATTCCG-CTA 372
BSNT_02167___ 373 GCCAATGTCGTCCCTCATAAGTATTGGTCAGGGAAGGAATGTCCGCG-AA 421
||.||.||.|||.|.|||.||||.|||||.||.||.|.||||||.|| .|
BPUM_1158___x 373 GCAAACGTGGTCACACATCAGTACTGGTCTGGAAAAGCATGTCCACGCCA 422
BSNT_02167___ 422 AATTATTAGATACGTGGGATTCGTTCAAAGCAGGAATTG----GG----- 462
..||.|| ..|||.|||.||...||.|||..|||.|||| ||
BPUM_1158___x 423 GCTTCTT-TCTACTTGGAATGAATTTAAAAAAGGGATTGAAACGGCAGAA 471
BSNT_02167___ 463 -----GGAGGCGG-CAGCCAAACTTACGTCGTGAAACAG-GGCGACACGC 505
||||.||| ||.| ||.||.|||||| ||.|| ||.||.|||.
BPUM_1158___x 472 GATCCGGAGACGGTCATC---ACATATGTCGTG-AAGAGCGGGGATACGT 517
BSNT_02167___ 506 TTACATCGATAGCGAGAGCATTTGGTGTTACGGTTGCTCAGCTGCAAG-- 553
|.|||...||.||||.|||...||||||.||.||| ||||
BPUM_1158___x 518 TAACAAGTATTGCGAAAGCTCATGGTGTCACAGTT---------CAAGAT 558
BSNT_02167___ 554 -------AGTGGA---ACAATATCGAAGACCCGAATCTTATTCGCGTTGG 593
|||||| |||.||.| ||.||||||...||||...||||
BPUM_1158___x 559 TTACAGAAGTGGAATGACATTAGC---GATCCGAATAAGATTCAAATTGG 605
BSNT_02167___ 594 TCAAGT-------ATTAATTGTAAGTGCTCCATCGTCCGCTGAAGAACCC 636
.||||| |||.||.|.|| ||.||.|.|
BPUM_1158___x 606 ACAAGTTCTCAAAATTTATCGAAA-------------CGATGCAAA---- 638
BSNT_02167___ 637 GAGC-TCTATCCGCTCCCTGATGGTATCAT------------TCAATTGA 673
|||| |.|||....|.||.|||||..|.|| ||.|||||
BPUM_1158___x 639 GAGCTTGTATAATTTGCCAGATGGGGTTATAAAGGTGACTTCTCCATTGA 688
BSNT_02167___ 674 CAACACCTTATACCTCA-GGAGAAC----ACGTCTTTCAGGTGCAACGAG 718
||| | |||||.| |||.|| .||.||.|..|
BPUM_1158___x 689 CAA-------------AGGGAGAGCATGTACGCCT----CGTCCAGCAGG 721
BSNT_02167___ 719 CACTTGCGGCTCTGTATTTTTACCCTGATAAAGGCGCTGTTAACAACGGA 768
|.|||||.|||.|.||||||||.||||||||||..||||..||.||.|||
BPUM_1158___x 722 CGCTTGCTGCTGTTTATTTTTATCCTGATAAAGCAGCTGCAAATAAAGGA 771
BSNT_02167___ 769 ATTGACGGCGTTTACGGACCGAAAACAGCTGACGCAGTTGCCCGTTTTCA 818
||.|||||.|||||.|||...|||||.||..||||.||.||.||||||||
BPUM_1158___x 772 ATAGACGGAGTTTATGGAGAAAAAACGGCGAACGCCGTAGCGCGTTTTCA 821
BSNT_02167___ 819 GTCT-GTTAACGGTTTAACTGC----TGACGGTATCTATGGGCCTGCGAC 863
| || ||.||.||| |||| |||.||..|.||.||.|||
BPUM_1158___x 822 G-CTGGTAAATGGT----CTGCCAAGTGATGGGGTATACGGACCT----- 861
BSNT_02167___ 864 GAAAGCGAAGATCGCAGCGCAA------TTAAGCTGA----------- 894
|||.||||| |.|| |.||||||.
BPUM_1158___x 862 -AAAACGAAG--------GAAAAGCTTCTGAAGCTGTTAAGTCAGTGA 900
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