Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02115 and BPUM_1157
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02115___xkdA.1.24716.seq
# -bsequence dna-align/BPUM_1157___xkdA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02115___xkdA-BPUM_1157___xkdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02115___xkdA-BPUM_1157___xkdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02115___xkdA
# 2: BPUM_1157___xkdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 380/655 (58.0%)
# Similarity: 380/655 (58.0%)
# Gaps: 164/655 (25.0%)
# Score: 1126.0
#
#
#=======================================
BSNT_02115___ 1 TTGGGCGATTAC-------TTATCACATCTGGAGGAATACGTTAAAAATT 43
||.|| |||.|.|||.|.||.|||.|..||||....|
BPUM_1157___x 1 -------ATGACTGGTTTTTTAACCCATTTAGAAGAAGATATTAAGCGGT 43
BSNT_02115___ 44 TATACGGCCGGCTGGGCATCACATCCCCTCATCACATTGACA-------- 85
||||.| |||| ||| |||
BPUM_1157___x 44 TATATG---------------------CTCA----ATT-ACAAATAAGCG 67
BSNT_02115___ 86 ----TGCTGA-----AAATCGCAAAGGA-----TCTGGATATT------T 115
||||.| |.|| |||||||| ||||.|| || |
BPUM_1157___x 68 GTCCTGCTTATAGAGAGAT-GCAAAGGATCGCTTCTGAAT-TTCGCGTGT 115
BSNT_02115___ 116 GGGTGCATTTTGAGGATATGGGGAGCATGATGGTGAAATACGACGGCATG 165
||||.||.|.||||||.|..||.|||||||||.|..|..|..|.||..|.
BPUM_1157___x 116 GGGTCCACTATGAGGAGACTGGCAGCATGATGATCCAGCATCAAGGTCTT 165
BSNT_02115___ 166 TACAGTATCGTATTGAACCAAAAAAAG-------TCACGGGAAGAGCAAT 208
||||||||..|||| |||.|| ||||..|||||.||.|
BPUM_1157___x 166 TACAGTATTATATT-------AAACAGATCCCTATCACCTGAAGAACAGT 208
BSNT_02115___ 209 GGGAGGATTTTGGCCATGAGCTGTGCCACGTGTTAAAGCATGCAGGCAAT 258
||.|||||||||.|||.|||||.||.||.|||.||||||||.||||||||
BPUM_1157___x 209 GGCAGGATTTTGCCCACGAGCTTTGTCATGTGCTAAAGCATACAGGCAAT 258
BSNT_02115___ 259 CATTTTCAGATGAACAAGCTCTTCAGAGAGCTTCAAGAATTCCAGGCAAA 308
|||||..|.||||||||.|||||..||||..|.||.||.||.||||||||
BPUM_1157___x 259 CATTTCAAAATGAACAAACTCTTTCGAGAATTGCAGGAGTTTCAGGCAAA 308
BSNT_02115___ 309 TCAATTTATGTACCACTTCTGTGTGCCAACCTTTATGCTGTTGCAGATGG 358
.|||||.|||||||||||.|||||.|||||||||||||||.||.|.|||.
BPUM_1157___x 309 ACAATTCATGTACCACTTTTGTGTTCCAACCTTTATGCTGCTGAAAATGA 358
BSNT_02115___ 359 AACTGCCGCAATGGAGAAGCC--AGGCA-CTCGCCA-----CA-ATTGC- 398
|.||.|| ||.|| .|||| |..|||| || |||||
BPUM_1157___x 359 AGCTTCC---------AACCCTTCGGCAGCAAGCCATTTTGCATATTGCT 399
BSNT_02115___ 399 --GGCGGTATTCCGGGTAACAAAGGAATTTGCTGATAAAAGGCTTGACAT 446
..|| ||.|..||.||...||..||||||||.|||.||||||.|.|
BPUM_1157___x 400 CAAACG---TTTCACGTCACTTGGGCTTTTGCTGAAAAACGGCTTGCCTT 446
BSNT_02115___ 447 GTTTGAACGGCGTAAAGCAGGTATTCAATTTCAGAAGCGGCT--CG-CTT 493
.||.||||.|||.|||||||||||||..||||||.||..|.| || |||
BPUM_1157___x 447 ATTCGAACAGCGAAAAGCAGGTATTCGTTTTCAGCAGGAGTTTACGTCTT 496
BSNT_02115___ 494 ATTTATTATCTCACAAGCGGCCAAATGCGTACGAGGAAGGCGATCAGCAG 543
||||| |.||| |||||
BPUM_1157___x 497 ATTTA----------------------------ATGAA-------AGCAG 511
BSNT_02115___ 544 CACTTGCAGGTCGCTGAGGAAAAAG-CGTTATATCATATTGGCAAAAACA 592
.| .|||||||.||..||.||| |||| |||||.| .|.||
BPUM_1157___x 512 AA----AAGGTCGCAGAAAAAGAAGTCGTT-TATCAAA--CGTAA----- 549
BSNT_02115___ 593 TCTGA 597
BPUM_1157___x 549 ----- 549
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