Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04035 and BPUM_1155
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04035.1.24716.seq
# -bsequence dna-align/BPUM_1155.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04035-BPUM_1155.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04035-BPUM_1155.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04035
# 2: BPUM_1155
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity: 252/592 (42.6%)
# Similarity: 252/592 (42.6%)
# Gaps: 236/592 (39.9%)
# Score: 524.0
#
#
#=======================================
BSNT_04035 1 ATGACAATACGTTTTTTCCATTTCTGTCTCCCCTCACCCTTTATTGGCTT 50
BPUM_1155 0 -------------------------------------------------- 0
BSNT_04035 51 TATTTCATCTTATCATTGCTTTATTAAGGTAATTTTA----AAGAAATGT 96
|||| |||.||| .||.|||
BPUM_1155 1 ---------------TTGC-----------AATCTTACCTGGAGGAAT-- 22
BSNT_04035 97 AAAGATCATATGAATCCGATATATAGTAAAATGAGAGAAAAAAAGGGAGA 146
||||.| |||||
BPUM_1155 23 -----TCATGT---------------TAAAA------------------- 33
BSNT_04035 147 GAGTCACATTAAGACACGCAGCAACATCCCGCTTATTATGTTTGCCCTGC 196
||||.| |.||.|.||.|.|||||.||.||...|||
BPUM_1155 34 ----------AAGAAA---ACCACCCTCACCCTTATCATCTTACTCCT-- 68
BSNT_04035 197 TGGTCTTCTTCGGCGGCGCCATCTATTGGATGTTATTTTCACTAAAAAAC 246
|.| |||||..|||...||.|||||||..|..||.||.||..||..|
BPUM_1155 69 TAG----CTTCGCTGGCATTATTTATTGGAAATGCTTCTCTCTTCAAGGC 114
BSNT_04035 247 GTTCCGAAAGGCA-ATCTCGTCCAATCGGTTGAATCGCCGGACGGCAGCT 295
||..|..|.||.| || ||.|||..||..|...|||.||.|||||.|..|
BPUM_1155 115 GTGTCTCATGGAACAT-TCATCCGCTCAATATCATCACCTGACGGAATGT 163
BSNT_04035 296 ATACGTTAAACACTTAT----GTATCCGA--AAACACCTTGAGCT----- 334
|||...|.|||||.||| .||.|.|| || ||||
BPUM_1155 164 ATATCATCAACACCTATCAGCATAGCGGAGGAA--------AGCTAAAGG 205
BSNT_04035 335 TAGATGCAGCCAGAGGTGAACTTGTAAATGAAAAAACACTTGTCAAGAGA 384
.|.|.||||.|||||..|||.|||.|||..||..|||.|.|..|||||..
BPUM_1155 206 AAAACGCAGTCAGAGCAGAAATTGAAAACAAATTAACCCATCGCAAGAAG 255
BSNT_04035 385 ACAATCTACTGGAATTACCCGG----ACAGCCGCCCAGCAGTGACGTGGG 430
|||||.||||||||.|||||.| |.|.||.|.||.|
BPUM_1155 256 ACAATTTACTGGAAATACCCTGATAAAGATCCCCTCATC----------- 294
BSNT_04035 431 TCAAT----CACCATACAG-----TGAAAATCGGCAATCAGACTTTACAT 471
|||| .|.|..|||| |.|||.|.||| ||.||..||||.||
BPUM_1155 295 -CAATGGAAAAACGGACAGCTTGTTCAAATTGGGC-ATGAGTTTTTAAAT 342
BSNT_04035 472 CTTGATACTGA----TGAAACGTATGATTGGCGAAAAGATGATC-ATTGG 516
.|.| ||| |||.|||||.|||| ||| .||.|
BPUM_1155 343 GTGG----TGAAGGGTGACACGTACGATT------------ATCGCTTTG 376
BSNT_04035 517 ATCCGTGAAGAACCGCCGCAGGCGTCAGTGAGGTGA------ 552
||| ||||| |.|.||
BPUM_1155 377 ATC-----AGAAC-----------------AAGAGAAAATAA 396
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