Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02911 and BPUM_1146
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02911___yncD.1.24716.seq
# -bsequence dna-align/BPUM_1146___alr2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02911___yncD-BPUM_1146___alr2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02911___yncD-BPUM_1146___alr2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02911___yncD
# 2: BPUM_1146___alr2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1209
# Identity: 864/1209 (71.5%)
# Similarity: 864/1209 (71.5%)
# Gaps: 48/1209 ( 4.0%)
# Score: 2872.5
#
#
#=======================================
BSNT_02911___ 1 TTGATGATAAAGCTTTGCCGAGAAGTTTGGATCGAAGTCAATCTTGATGC 50
||||.||||||.|||.|.|||||.||||||||||||||||||||||
BPUM_1146___a 1 ---ATGAAAAAGCTATGCAGGGAAGTCTGGATCGAAGTCAATCTTGATG- 46
BSNT_02911___ 51 CGTTAAAAAGAATTTGCG-AGCGATCC--GCCGTCATATTCCACATAAGA 97
||.|.|||||||.|..|| |||.||.| || .|||||||||...||.|
BPUM_1146___a 47 CGATTAAAAGAAATATCGAAGCCATTCAAGC--GCATATTCCAAGGAAAA 94
BSNT_02911___ 98 GCAAAATTATGGCTGTCGTAAAAGCGAACGGTTATGGTCACGGGTCTATA 147
|.||.||.|||||||||||.||.|||||.|.||||||.||.||.||..||
BPUM_1146___a 95 GTAAGATCATGGCTGTCGTGAAGGCGAATGCTTATGGACATGGCTCAGTA 144
BSNT_02911___ 148 GAAGTGGCACGCCATGCACTGGAACACGGGGCGAGTGAGCTTGCTGTTGC 197
||.||.||.||.||.|||||||||..|||.||||..|||||.||.|||||
BPUM_1146___a 145 GAGGTAGCCCGGCAGGCACTGGAAAGCGGTGCGACGGAGCTCGCAGTTGC 194
BSNT_02911___ 198 CAGTGTGGAGGAAGGAATCGTTTTACGTAAAGCTGGGATTACAGCACCTA 247
.||..||||||||||.||.||..|.||.|.|||....|||..||||||.|
BPUM_1146___a 195 TAGCTTGGAGGAAGGCATTGTGCTGCGAAGAGCAAAAATTGAAGCACCGA 244
BSNT_02911___ 248 TCCTTGTGCTTGGTTTTACATCCCTTAGTTGTGTAAAGAAGTCAGCAGCT 297
|..|.||.|||||.|||||..|.||...||||||.||.|.|.|.||.||.
BPUM_1146___a 245 TTTTGGTTCTTGGATTTACCCCGCTCGATTGTGTGAAAAGGGCTGCGGCC 294
BSNT_02911___ 298 TG--GAAT--ATAACATTATC-AGCATTCCAGGT--TGATTGGATGAAAG 340
|| |||| || ||||| .||.||| || .||.|||||....|
BPUM_1146___a 295 TGGAGAATTGAT----TTATCTGGCCTTC---GTGAAGACTGGATTGTTG 337
BSNT_02911___ 341 AAGCAAACGAGATATTGGAAAAAGAAGCGAGT--GCTAACCGGCTGGCCA 388
|||||||.|||||.||.|.|.||||||..||| || .||||||.|.||
BPUM_1146___a 338 AAGCAAATGAGATCTTAGCAGAAGAAGAAAGTCAGC--GCCGGCTTGGCA 385
BSNT_02911___ 389 TTCATATTAACGTGGATACCGGCATGGGACGATTAGGTGTACGCACAAAG 438
|.|||.|.||.||.||.||.||.|||||.|||.||||||||||.||.|||
BPUM_1146___a 386 TACATGTCAATGTCGACACAGGGATGGGGCGACTAGGTGTACGGACGAAG 435
BSNT_02911___ 439 GAAGAACTTTTAGAAGTAGTGAAAGCCTT---AAAGGCAAGTAAATTCCT 485
|||||.||.||||.|||.|||.|||||.| |||| |||.||..|||
BPUM_1146___a 436 GAAGAGCTGTTAGGAGTGGTGGAAGCCCTTGAAAAG---AGTGAAAACCT 482
BSNT_02911___ 486 CAGAT-GGACAGGGATTTTCACACATTTTTCGACAGCTGATGAACCGGAC 534
|||.| |||| ||||||||.||||||||.||.||.||.|||||.||.|||
BPUM_1146___a 483 CAGGTGGGAC-GGGATTTTTACACATTTCTCTACTGCGGATGAGCCAGAC 531
BSNT_02911___ 535 ACAACACTCACAAAGCTGCAGCACGAAAAATTCATCAGTTTTCTCAGCTT 584
.|.....||||...|||||||||....|..||.||...||||||..|.||
BPUM_1146___a 532 CCTGATTTCACGCTGCTGCAGCATAGTATTTTTATTGATTTTCTTCGTTT 581
BSNT_02911___ 585 TTTAAAAAAACAGGGGATTGAGCTGCCCACCGTGCATATGTGCAACACGG 634
|||.||||||||.||.|||.|||||||.|||||.||||||..|||.||.|
BPUM_1146___a 582 TTTGAAAAAACAAGGAATTAAGCTGCCAACCGTACATATGAACAATACAG 631
BSNT_02911___ 635 CTGCAGCTATCGCTTTTCCGGAATTTAGCGCTGATATGATCCGTTTAGGT 684
|.||.||.|||||.|||||.|||||||||||.||||||||.||..||||.
BPUM_1146___a 632 CGGCTGCCATCGCGTTTCCTGAATTTAGCGCCGATATGATTCGGCTAGGC 681
BSNT_02911___ 685 ATCGGCTTATATGGTTTATATCCTTCAGC-CTATATTAAACAAC-TAAAT 732
|||||..|||||||..|.|||||.|| || .||.|||.|| |.| ||.||
BPUM_1146___a 682 ATCGGGCTATATGGACTGTATCCCTC-GCAATACATTGAA-AGCTTAGAT 729
BSNT_02911___ 733 -CTCGTTAAGCTTGAACCTGCGTTAAGTTTAAAGGCGCGCATCGCTTATG 781
|| |||.||||.||.||.||..|.||||||||.|||.|.||.||.|..|
BPUM_1146___a 730 GCT-GTTCAGCTAGAGCCCGCTCTCAGTTTAAAAGCGAGAATTGCGTTCG 778
BSNT_02911___ 782 TGAAAACCATGCGGACAGAACCCCGAACCGTTAGCTATGGTGCTACATAC 831
||||....|||..||||||.||..||||.||.||||||||.||.||.||.
BPUM_1146___a 779 TGAAGGAGATGGTGACAGAGCCAAGAACTGTCAGCTATGGGGCAACGTAT 828
BSNT_02911___ 832 GTCGCAGAGCCTAATGAAGTAATTGCTACACTCCCGATTGGCTATGCTGA 881
||.|||.|||...|||||||.|||||.||..|.|||||.||.||.||.||
BPUM_1146___a 829 GTAGCAAAGCGGGATGAAGTCATTGCCACCATACCGATCGGTTACGCAGA 878
BSNT_02911___ 882 CGGCTATTCTCGTGCCCTTTCCAATCGCGGGTTTGTTCTTCATCGCGGAA 931
.||.||.||.|||||..|.||||||||.||.|||.|.|||...||.|||.
BPUM_1146___a 879 TGGGTACTCACGTGCTTTATCCAATCGGGGATTTATGCTTTTCCGAGGAG 928
BSNT_02911___ 932 AACGAGTGCCAGTGGCAGGAAGAGTAACAATGGATATGATCATGGTCAGT 981
|||||.||||..|.||.||..||||.|||||||||||||..|||.|||||
BPUM_1146___a 929 AACGAATGCCGATTGCTGGCCGAGTCACAATGGATATGACGATGATCAGT 978
BSNT_02911___ 982 TTAGGAGAAAACGGTGAAGGTAAA-CAAGGAGATGAAGTCGTGATTTACG 1030
|||||||||| ||||.|.||| |||||.||.||||||||.||.||||
BPUM_1146___a 979 TTAGGAGAAA----TGAAAGCAAAGCAAGGCGAGGAAGTCGTCATATACG 1024
BSNT_02911___ 1031 GTAAGCAAAAAGGAGCCGAGATTTCCGTTGATGAAGTGGCTGAAATGCTC 1080
||...|||||.||.|..||.|||||.|||||||||.|.||.||||||||.
BPUM_1146___a 1025 GTCGTCAAAAGGGCGGAGAAATTTCTGTTGATGAAATCGCCGAAATGCTG 1074
BSNT_02911___ 1081 AATACGATTAACTATGAAGTCGTGTCTACATTAAGCCGCCGCATCCCTCG 1130
|||||.||.|||||.||||||.|..|.||..||||||||||..||||..|
BPUM_1146___a 1075 AATACAATCAACTACGAAGTCATCGCCACCCTAAGCCGCCGAGTCCCAAG 1124
BSNT_02911___ 1131 TTTTTATATAAGAGATGGCGAGATTTTTAAAGTATCAACTCCAGTATTAT 1180
.||||||....|||..||..|||||.|||||.||||.||.||.||..|.|
BPUM_1146___a 1125 ATTTTATCGTCGAGGCGGGAAGATTATTAAAATATCGACGCCGGTGATGT 1174
BSNT_02911___ 1181 ACGTATAG- 1188
|.||.| |
BPUM_1146___a 1175 ATGTGT-GA 1182
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