Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01163 and BPUM_1132
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_01163.1.24716.seq
# -bsequence dna-align/BPUM_1132___rapH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01163-BPUM_1132___rapH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01163-BPUM_1132___rapH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01163
# 2: BPUM_1132___rapH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1231
# Identity: 770/1231 (62.6%)
# Similarity: 770/1231 (62.6%)
# Gaps: 212/1231 (17.2%)
# Score: 2074.0
#
#
#=======================================
BSNT_01163 1 -TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAAT 49
|.||| .||| |.|..|||||.|.|||||||||.||.||.|||||||
BPUM_1132___r 1 ATGGAG-AAAG---TTCTTTCTTCACATGTAGGTGTGAAAATCAATGAAT 46
BSNT_01163 50 GGTACAAGATGATTCGCCAGTTCAGTGTTCCGGATGCTGAGGTTCTGAAA 99
||||.||.||||||||.||.||||||||.||.|||||.|||.||.|||||
BPUM_1132___r 47 GGTATAAAATGATTCGACAATTCAGTGTACCTGATGCAGAGATTTTGAAA 96
BSNT_01163 100 GCGGAGGTGGAGCAGGACATTCAGAA--GATGGAAGAGGATCAGGATTTG 147
||.|||||.||.||.||.||| ||| |||||||||.|||||||||||.
BPUM_1132___r 97 GCTGAGGTAGAACAAGAAATT--GAACGGATGGAAGAAGATCAGGATTTA 144
BSNT_01163 148 CTGATCTATTATTCTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTA 197
||.||.||||||....|||||||.|||||.||||||||.|||||||||||
BPUM_1132___r 145 CTCATTTATTATCAATTGATGTGCTTTCGTCACCAGCTTATGCTTGATTA 194
BSNT_01163 198 TTTGGAGCCGGGA-CAGCCTTACGGAAATCGTCCTACAGTGACAGAGCTT 246
|.|..|.|| | |||....||| |||| |||.|.||..|.||..|.
BPUM_1132___r 195 TATCAAACC---ATCAGAAAAACG---ATCG-CCTTCTGTTTCTGATTTG 237
BSNT_01163 247 CTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATA 296
.||||.|..|||||||...||.|..|..||||..|.||..|.|||.||||
BPUM_1132___r 238 GTTGATAAAATTGAGAATTCTAATCATCAACTTTCCGGTATGTTGCAATA 287
BSNT_01163 297 CTAC---TCTTTGTTTTTCCGCGGCATGTATGAATTTGACCAA-AAAGAA 342
.||| .||| |||||..| ||.|||.|||||||| |..|| ||||||
BPUM_1132___r 288 TTACAATGCTT--TTTTTAAG-GGAATGCATGAATTT-AGTAAGAAAGAA 333
BSNT_01163 343 TATGTGGAAGCGATCGGGTATT-----ATCGCGAGGCGGAGAAAGAACTG 387
|||||..|.||.||....|||| ||||| .||||| |
BPUM_1132___r 334 TATGTACAGGCTATTCAATATTACAAGATCGC-------TGAAAG----G 372
BSNT_01163 388 CCGTTTG-------TGTCAGATGAAATTGAGAAAGCGGAATTCCATTTTA 430
|.|.||| |||| |||||.||||||.|||||||.|||||.||.|
BPUM_1132___r 373 CAGCTTGCACTGGTTGTC-GATGATATTGAGCAAGCGGAGTTCCACTTCA 421
BSNT_01163 431 AAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT 480
|.|||||.|||||.||.|||...|||||.|||||.|||||.||.||||||
BPUM_1132___r 422 AGGTGGCTGAAGCCTACTATATTATGAAACAAACTCATGTTTCTATGCAT 471
BSNT_01163 481 CATATTCTTCAA-GCCTTAGACATTTATCAAAACCAT--CCCTTATACAG 527
||.| ||.|.|| ||..||||.||||||.||.|.||| .|..||||.||
BPUM_1132___r 472 CACA-TCATAAAGGCGCTAGATATTTATAAAGAACATGAACAGTATAGAG 520
BSNT_01163 528 CATTAG--AACGATACAAAGCTTGTTTGTGATCGCCGGCAACTATGATGA 575
||.| || ||.|||||..|..||||.||.||.||.||.||||||||
BPUM_1132___r 521 --TTCGTCAA--ATTCAAAGTCTAATTGTCATAGCAGGAAATTATGATGA 566
BSNT_01163 576 TTTCAAACAT----TATGATAAAG-CGCTCCCGCATTTAGAAAAGGC-GC 619
||| ||| ||||| |||| ||.|.|..||||| ||||.| ||
BPUM_1132___r 567 TTT----CATGAGATATGA-AAAGTCGTTGCAACATTT---AAAGACTGC 608
BSNT_01163 620 ---TGGAATTGGCCATGGACATTCAAA--ATGACAGGTTTA-TCGC---- 659
|..|||| ||..|||.| .|||| ||.| |.||||| |.||
BPUM_1132___r 609 TTATTCAATT-GCTGTGGGC--GCAAACGATCA-ACGTTTAGTAGCAAAA 654
BSNT_01163 660 -CATTTCTCTATTGAACATCGCGAACAGCTATGACAG---ATCA--GGAG 703
||| ||||.||.||.|..||.|..|||||.|| |||| |.|.
BPUM_1132___r 655 ACAT-----TATTAAATATTGGTAATACATATGATAGGCAATCAAGGTAT 699
BSNT_01163 704 ACGATCAGATGGCTGTAGAACATTTCCAAAAAGCGGCGAAAGTAAGCA-- 751
| |||| |||..||.|.|||| |.||||..|.|..||..|.||
BPUM_1132___r 700 A----CAGA-GGCAATAAAGCATT---ATAAAGAAGTGTTAGATATCATT 741
BSNT_01163 752 ------GAGAGAAAGTGCCTGA-----------TCTGCTTCCGAAAGTCT 784
|| |.||||||.|..| |||..|| ||| |
BPUM_1132___r 742 TCTTCGGA-AAAAAGTGACATAAAGCCAATCACTCTATTT-----AGT-T 784
BSNT_01163 785 TGT-TTGGATTAAGCTGGACA----TTATGTAAAGCGGGCCAAACACA-G 828
||| |||| ..||||.||| |.|| |||||..| |
BPUM_1132___r 785 TGTGTTGG---TCGCTGTACAAGTCTAAT-----------CAAACTGATG 820
BSNT_01163 829 AAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTC 878
|| |||..||.|.||.|.||.||||||.|| |||| .|||
BPUM_1132___r 821 AA-GCGGATCTGCTCGTTGAAGAAGGACTA----ATAT--------ATTC 857
BSNT_01163 879 TCACAAATTTTATAAAGAATT------GTTTC-TGTTCTT----GC---- 913
|.|||| ..||||..||| ||.|| ||||.|| ||
BPUM_1132___r 858 -CTCAAA---GGTAAATGATTCGCTAAGTGTCTTGTTATTTAAAGCATTA 903
BSNT_01163 914 -AGGCCGTGTACAAGGAGACTGTTGA--------TGAACGAAAAATTCAT 954
|.||..|.||.|.|||.||||.||| ||||.|||...|| |
BPUM_1132___r 904 AAAGCTATTTATATGGATACTGATGAACAGGCTTTGAAAGAAGTGTT--T 951
BSNT_01163 955 GATCTTTTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGC 1004
|||.| |||.|||.|||||||.||.||.|..||..|.|||||
BPUM_1132___r 952 GATAT---------TTTTGAAGAAAAGAAACTACATGTCTATGTGGAAGC 992
BSNT_01163 1005 ATGTGCCCGGAGTG-CTGCCGCTGTTTT-TGAAAGCAGCTGTCACTTTGA 1052
||.|||.|..|||| |.| |.|.|||| |||||..|...|..|||||||
BPUM_1132___r 993 ATTTGCTCAAAGTGTCGG--GTTATTTTATGAAAAAAAAGGGGACTTTGA 1040
BSNT_01163 1053 ACAAGCCGCTGCGTTTTATCGGAAAGTG--CTGAAAGCCCAAGAAGATAT 1100
|.||||.||.|..|.||| |.||||| | ||.||.||.|||.|.|||||
BPUM_1132___r 1041 AAAAGCTGCCGAATATTA-CAGAAAG-GCTCTTAAGGCTCAAAATGATAT 1088
BSNT_01163 1101 TCTAAAAGGAGAGTGTTTATATGCCTATTAA 1131
||.|||||||||||||.|.||||..||||||
BPUM_1132___r 1089 TCAAAAAGGAGAGTGTCTGTATGATTATTAA 1119
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