Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01982 and BPUM_1120

See Amino acid alignment / Visit BSNT_01982 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_01982___yjcJ.1.24716.seq
#    -bsequence dna-align/BPUM_1120___yjcJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01982___yjcJ-BPUM_1120___yjcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01982___yjcJ-BPUM_1120___yjcJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01982___yjcJ
# 2: BPUM_1120___yjcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1218
# Identity:     857/1218 (70.4%)
# Similarity:   857/1218 (70.4%)
# Gaps:          84/1218 ( 6.9%)
# Score: 2874.0
# 
#
#=======================================

BSNT_01982___      1 TTGAGTAAACACAATTGGACGCTGGAAACCCAGCTCGTGCACAATCCATT     50
                     .|||..|.|||..|||||||..|.||||||||.|||||.||.||..||||
BPUM_1120___y      1 ATGACCACACATGATTGGACATTCGAAACCCAACTCGTTCATAACGCATT     50

BSNT_01982___     51 TAAAACAGACGGCGGAACCGGGGCGGTCAGTGTACCGATTCAGCACGCCT    100
                     .|||||||||.|...|||.||.||.||||||||.|||||||||||.||.|
BPUM_1120___y     51 CAAAACAGACCGTTCAACAGGTGCAGTCAGTGTGCCGATTCAGCATGCGT    100

BSNT_01982___    101 CGACTTTTCACCAATCTTCA--TTTGAAGAGTTCGGGGCATATGATTACA    148
                     |.||.|||||.|||  ..||  |||||.||.||.||...||||||.|||.
BPUM_1120___y    101 CCACCTTTCATCAA--AGCAGCTTTGATGATTTTGGTCAATATGACTACT    148

BSNT_01982___    149 GCCGCTCTGGCACGCCGACAAGAACAGCTCTCGAAGAAACAATTGCCGCA    198
                     ...|.||.||.||.||.|||.|...|||..|.||.||.||.|||||.||.
BPUM_1120___y    149 CAAGATCGGGGACTCCTACACGTCAAGCGTTAGAGGATACGATTGCGGCG    198

BSNT_01982___    199 CTGGAAGGCGGAACAAGAGGATTTGCTTT--CAGTTCAGGCATGGCTGCC    246
                     ||.|||||.|||||.|||||..|||||||  ||  ||.||||||||.|||
BPUM_1120___y    199 CTAGAAGGAGGAACGAGAGGGCTTGCTTTTGCA--TCTGGCATGGCAGCC    246

BSNT_01982___    247 ATCTCAACAGCATTTTTACTGCTGTCACAGGGTGATCACGTTCTTGTGAC    296
                     |||||.||.||.|||.|.||..|.|||.|.||.||||||||.|||||.||
BPUM_1120___y    247 ATCTCCACTGCTTTTCTTCTATTATCAAAAGGAGATCACGTCCTTGTCAC    296

BSNT_01982___    297 AGAAGATGTATACGGCGGAACCTTCCGTATGGTGACAGAGGTGCTGACCC    346
                     |..||||||.||.||.||.||.||.||||||.|.||..|.||.||..|..
BPUM_1120___y    297 AAGAGATGTGTATGGTGGTACATTTCGTATGATCACCCAAGTCCTTTCGA    346

BSNT_01982___    347 GGTTTGGCATTGAGCATACGTTTGTCGACATGACGGATCGTAATGAAGTG    396
                     |.||.||||||||||||||.|||||.||||||||||||...|||||||| 
BPUM_1120___y    347 GATTCGGCATTGAGCATACCTTTGTGGACATGACGGATTTGAATGAAGT-    395

BSNT_01982___    397 GCGCGGA----GCA-TCAAGCCGAATACAAAGGTCATTTATATGGAGACG    441
                        |..|    ||| |||| .|||||||.|||||||||||.|||||.||.
BPUM_1120___y    396 ---CAAAAAAGGCATTCAA-TCGAATACGAAGGTCATTTACATGGAAACA    441

BSNT_01982___    442 CCATCAAATCCGACACTTGGGATTACGGATATTAAA--GCGATTGTTCAG    489
                     ||.|||||.|||||.||.||.|||||||||| ||.|  ||| |.||.|||
BPUM_1120___y    442 CCGTCAAACCCGACGCTAGGAATTACGGATA-TAGAGGGCG-TCGTCCAG    489

BSNT_01982___    490 CTTGCAAAAGAAAACGGCTGTCTGACCTTTCTGGACAATACATTCATGAC    539
                     |||||.||||||.|.|.|||||||||.|||.|.||.||||||||..|.||
BPUM_1120___y    490 CTTGCGAAAGAACATGACTGTCTGACATTTTTAGATAATACATTTTTAAC    539

BSNT_01982___    540 ACCGGCACTGCAGCGTCCGCTTGACCTCGGCGTGGATATTGTACTTCACA    589
                     ||||||.||.|||||||||||.|||||.|||||.||..||||.||.||||
BPUM_1120___y    540 ACCGGCTCTTCAGCGTCCGCTCGACCTTGGCGTTGACGTTGTCCTGCACA    589

BSNT_01982___    590 GCGCGACAAAATTCTTAAGCGGACACAGCGATGTGCTCTCAGGTTTGGCT    639
                     ||||.||.|||||.||.|||||.||.||.|||||.||.|||||.||.||.
BPUM_1120___y    590 GCGCAACGAAATTTTTGAGCGGTCATAGTGATGTACTGTCAGGCTTAGCG    639

BSNT_01982___    640 GCTGTCAAAGATGAAGAGCTTGGGA-AGCAGCTGTATAAGCTGCAAAACG    688
                     |..||.||||||||..||| ||||| ||.|.||.|||..||||||||||.
BPUM_1120___y    640 GTGGTGAAAGATGAGAAGC-TGGGAGAGGAACTCTATTCGCTGCAAAACT    688

BSNT_01982___    689 CGTTCGGCGCCGTCCTTGGCGTACAGGATTGCTGGCTTGTCCTGCGCGGA    738
                     |.|||||.||.|||||||||||.|||||||||||||||||..|..|.||.
BPUM_1120___y    689 CATTCGGTGCGGTCCTTGGCGTGCAGGATTGCTGGCTTGTGTTAAGAGGG    738

BSNT_01982___    739 TTAAAAACATTGCAGGTCCGTTTAGAGAAGGCGAGTCAAACAGC------    782
                     ||||||||..|.|||||..|.||.||.||.||.||.|||||.||      
BPUM_1120___y    739 TTAAAAACCCTTCAGGTGAGATTGGAAAAAGCCAGCCAAACGGCATTTGA    788

BSNT_01982___    783 ---CCAGCGGCTTGCGGAATTTTTC-CAGAAGCATCCGGCGGTGAAGCGC    828
                        |     ||||    .||||.|| .|||| |||||.||||||||....
BPUM_1120___y    789 ACTC-----GCTT----CATTTCTCAAAGAA-CATCCTGCGGTGAAAAAA    828

BSNT_01982___    829 GTGTATTATCCGGGACTGGCTGATCATCCCGGCGCTGAAACCCAT-----    873
                     ||.||.|||||.||..|.|.|.|.||||..||.||.||    |||     
BPUM_1120___y    829 GTATACTATCCAGGCTTAGATAACCATCTAGGAGCAGA----CATTCAGC    874

BSNT_01982___    874 AAAAGCCAGTCAACGGGAGCGGGCGCCGTGCTATCTTTTGAGCTTGAAAG    923
                     .|||||.|| |||..|||||.||.|||||.||.||.|||||..|.||||.
BPUM_1120___y    875 GAAAGCAAG-CAAGCGGAGCTGGAGCCGTTCTCTCATTTGAATTAGAAAA    923

BSNT_01982___    924 CAAAGAGGCCGT-TAAGAAGTTAGTCGAGAATGTGTCACTCCCAGTCTTC    972
                     |.|||..||.|| .||||| |||||.||...|||..||.|.||.||.|||
BPUM_1120___y    924 CGAAGCAGCAGTCAAAGAA-TTAGTGGACGCTGTCACATTACCTGTATTC    972

BSNT_01982___    973 GCTGTCAGCCTTGGCGCCGTGGAATCGATTTTGTCCTATCCGGCAACGAT   1022
                     ||.|||||||||||||||||.|||||.|||.||||.||.||.||.|..||
BPUM_1120___y    973 GCCGTCAGCCTTGGCGCCGTCGAATCCATTCTGTCATACCCAGCCAAAAT   1022

BSNT_01982___   1023 GTCTCATGCGGCAATGCCTAAGGAAGAGCGTGAAAAACGCGGTATCACTG   1072
                     |||.||||||||.|||||.||.|||||..|.||||||.|.||.||.||.|
BPUM_1120___y   1023 GTCACATGCGGCTATGCCAAAAGAAGAAAGAGAAAAAAGAGGAATTACAG   1072

BSNT_01982___   1073 ATGGCCTGCTCCGTCTGAGTGTCGGCGTCGAACATGCAGACGATTTAGAA   1122
                     ||||..||||.|||.|.|||||.||.||.|||.|.|.|||.||..|..||
BPUM_1120___y   1073 ATGGGTTGCTTCGTTTAAGTGTTGGAGTTGAAAACGGAGAAGACCTCAAA   1122

BSNT_01982___   1123 CACGATTTCGAACAAGCGCTGAAAGA--AATT---GCTCCAGTTGCGGTT   1167
                     |.|||.|||.|||||||.||   .||  ||||   ||        |.|||
BPUM_1120___y   1123 CGCGACTTCAAACAAGCACT---CGATCAATTAAAGC--------CCGTT   1161

BSNT_01982___   1168 C--GTTAA----------   1173
                     |  ||.||          
BPUM_1120___y   1162 CTTGTCAACCAATCATGA   1179


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