Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01982 and BPUM_1120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_01982___yjcJ.1.24716.seq
# -bsequence dna-align/BPUM_1120___yjcJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01982___yjcJ-BPUM_1120___yjcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01982___yjcJ-BPUM_1120___yjcJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01982___yjcJ
# 2: BPUM_1120___yjcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1218
# Identity: 857/1218 (70.4%)
# Similarity: 857/1218 (70.4%)
# Gaps: 84/1218 ( 6.9%)
# Score: 2874.0
#
#
#=======================================
BSNT_01982___ 1 TTGAGTAAACACAATTGGACGCTGGAAACCCAGCTCGTGCACAATCCATT 50
.|||..|.|||..|||||||..|.||||||||.|||||.||.||..||||
BPUM_1120___y 1 ATGACCACACATGATTGGACATTCGAAACCCAACTCGTTCATAACGCATT 50
BSNT_01982___ 51 TAAAACAGACGGCGGAACCGGGGCGGTCAGTGTACCGATTCAGCACGCCT 100
.|||||||||.|...|||.||.||.||||||||.|||||||||||.||.|
BPUM_1120___y 51 CAAAACAGACCGTTCAACAGGTGCAGTCAGTGTGCCGATTCAGCATGCGT 100
BSNT_01982___ 101 CGACTTTTCACCAATCTTCA--TTTGAAGAGTTCGGGGCATATGATTACA 148
|.||.|||||.||| ..|| |||||.||.||.||...||||||.|||.
BPUM_1120___y 101 CCACCTTTCATCAA--AGCAGCTTTGATGATTTTGGTCAATATGACTACT 148
BSNT_01982___ 149 GCCGCTCTGGCACGCCGACAAGAACAGCTCTCGAAGAAACAATTGCCGCA 198
...|.||.||.||.||.|||.|...|||..|.||.||.||.|||||.||.
BPUM_1120___y 149 CAAGATCGGGGACTCCTACACGTCAAGCGTTAGAGGATACGATTGCGGCG 198
BSNT_01982___ 199 CTGGAAGGCGGAACAAGAGGATTTGCTTT--CAGTTCAGGCATGGCTGCC 246
||.|||||.|||||.|||||..||||||| || ||.||||||||.|||
BPUM_1120___y 199 CTAGAAGGAGGAACGAGAGGGCTTGCTTTTGCA--TCTGGCATGGCAGCC 246
BSNT_01982___ 247 ATCTCAACAGCATTTTTACTGCTGTCACAGGGTGATCACGTTCTTGTGAC 296
|||||.||.||.|||.|.||..|.|||.|.||.||||||||.|||||.||
BPUM_1120___y 247 ATCTCCACTGCTTTTCTTCTATTATCAAAAGGAGATCACGTCCTTGTCAC 296
BSNT_01982___ 297 AGAAGATGTATACGGCGGAACCTTCCGTATGGTGACAGAGGTGCTGACCC 346
|..||||||.||.||.||.||.||.||||||.|.||..|.||.||..|..
BPUM_1120___y 297 AAGAGATGTGTATGGTGGTACATTTCGTATGATCACCCAAGTCCTTTCGA 346
BSNT_01982___ 347 GGTTTGGCATTGAGCATACGTTTGTCGACATGACGGATCGTAATGAAGTG 396
|.||.||||||||||||||.|||||.||||||||||||...||||||||
BPUM_1120___y 347 GATTCGGCATTGAGCATACCTTTGTGGACATGACGGATTTGAATGAAGT- 395
BSNT_01982___ 397 GCGCGGA----GCA-TCAAGCCGAATACAAAGGTCATTTATATGGAGACG 441
|..| ||| |||| .|||||||.|||||||||||.|||||.||.
BPUM_1120___y 396 ---CAAAAAAGGCATTCAA-TCGAATACGAAGGTCATTTACATGGAAACA 441
BSNT_01982___ 442 CCATCAAATCCGACACTTGGGATTACGGATATTAAA--GCGATTGTTCAG 489
||.|||||.|||||.||.||.|||||||||| ||.| ||| |.||.|||
BPUM_1120___y 442 CCGTCAAACCCGACGCTAGGAATTACGGATA-TAGAGGGCG-TCGTCCAG 489
BSNT_01982___ 490 CTTGCAAAAGAAAACGGCTGTCTGACCTTTCTGGACAATACATTCATGAC 539
|||||.||||||.|.|.|||||||||.|||.|.||.||||||||..|.||
BPUM_1120___y 490 CTTGCGAAAGAACATGACTGTCTGACATTTTTAGATAATACATTTTTAAC 539
BSNT_01982___ 540 ACCGGCACTGCAGCGTCCGCTTGACCTCGGCGTGGATATTGTACTTCACA 589
||||||.||.|||||||||||.|||||.|||||.||..||||.||.||||
BPUM_1120___y 540 ACCGGCTCTTCAGCGTCCGCTCGACCTTGGCGTTGACGTTGTCCTGCACA 589
BSNT_01982___ 590 GCGCGACAAAATTCTTAAGCGGACACAGCGATGTGCTCTCAGGTTTGGCT 639
||||.||.|||||.||.|||||.||.||.|||||.||.|||||.||.||.
BPUM_1120___y 590 GCGCAACGAAATTTTTGAGCGGTCATAGTGATGTACTGTCAGGCTTAGCG 639
BSNT_01982___ 640 GCTGTCAAAGATGAAGAGCTTGGGA-AGCAGCTGTATAAGCTGCAAAACG 688
|..||.||||||||..||| ||||| ||.|.||.|||..||||||||||.
BPUM_1120___y 640 GTGGTGAAAGATGAGAAGC-TGGGAGAGGAACTCTATTCGCTGCAAAACT 688
BSNT_01982___ 689 CGTTCGGCGCCGTCCTTGGCGTACAGGATTGCTGGCTTGTCCTGCGCGGA 738
|.|||||.||.|||||||||||.|||||||||||||||||..|..|.||.
BPUM_1120___y 689 CATTCGGTGCGGTCCTTGGCGTGCAGGATTGCTGGCTTGTGTTAAGAGGG 738
BSNT_01982___ 739 TTAAAAACATTGCAGGTCCGTTTAGAGAAGGCGAGTCAAACAGC------ 782
||||||||..|.|||||..|.||.||.||.||.||.|||||.||
BPUM_1120___y 739 TTAAAAACCCTTCAGGTGAGATTGGAAAAAGCCAGCCAAACGGCATTTGA 788
BSNT_01982___ 783 ---CCAGCGGCTTGCGGAATTTTTC-CAGAAGCATCCGGCGGTGAAGCGC 828
| |||| .||||.|| .|||| |||||.||||||||....
BPUM_1120___y 789 ACTC-----GCTT----CATTTCTCAAAGAA-CATCCTGCGGTGAAAAAA 828
BSNT_01982___ 829 GTGTATTATCCGGGACTGGCTGATCATCCCGGCGCTGAAACCCAT----- 873
||.||.|||||.||..|.|.|.|.||||..||.||.|| |||
BPUM_1120___y 829 GTATACTATCCAGGCTTAGATAACCATCTAGGAGCAGA----CATTCAGC 874
BSNT_01982___ 874 AAAAGCCAGTCAACGGGAGCGGGCGCCGTGCTATCTTTTGAGCTTGAAAG 923
.|||||.|| |||..|||||.||.|||||.||.||.|||||..|.||||.
BPUM_1120___y 875 GAAAGCAAG-CAAGCGGAGCTGGAGCCGTTCTCTCATTTGAATTAGAAAA 923
BSNT_01982___ 924 CAAAGAGGCCGT-TAAGAAGTTAGTCGAGAATGTGTCACTCCCAGTCTTC 972
|.|||..||.|| .||||| |||||.||...|||..||.|.||.||.|||
BPUM_1120___y 924 CGAAGCAGCAGTCAAAGAA-TTAGTGGACGCTGTCACATTACCTGTATTC 972
BSNT_01982___ 973 GCTGTCAGCCTTGGCGCCGTGGAATCGATTTTGTCCTATCCGGCAACGAT 1022
||.|||||||||||||||||.|||||.|||.||||.||.||.||.|..||
BPUM_1120___y 973 GCCGTCAGCCTTGGCGCCGTCGAATCCATTCTGTCATACCCAGCCAAAAT 1022
BSNT_01982___ 1023 GTCTCATGCGGCAATGCCTAAGGAAGAGCGTGAAAAACGCGGTATCACTG 1072
|||.||||||||.|||||.||.|||||..|.||||||.|.||.||.||.|
BPUM_1120___y 1023 GTCACATGCGGCTATGCCAAAAGAAGAAAGAGAAAAAAGAGGAATTACAG 1072
BSNT_01982___ 1073 ATGGCCTGCTCCGTCTGAGTGTCGGCGTCGAACATGCAGACGATTTAGAA 1122
||||..||||.|||.|.|||||.||.||.|||.|.|.|||.||..|..||
BPUM_1120___y 1073 ATGGGTTGCTTCGTTTAAGTGTTGGAGTTGAAAACGGAGAAGACCTCAAA 1122
BSNT_01982___ 1123 CACGATTTCGAACAAGCGCTGAAAGA--AATT---GCTCCAGTTGCGGTT 1167
|.|||.|||.|||||||.|| .|| |||| || |.|||
BPUM_1120___y 1123 CGCGACTTCAAACAAGCACT---CGATCAATTAAAGC--------CCGTT 1161
BSNT_01982___ 1168 C--GTTAA---------- 1173
| ||.||
BPUM_1120___y 1162 CTTGTCAACCAATCATGA 1179
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