Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01981 and BPUM_1119

See Amino acid alignment / Visit BSNT_01981 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_01981___yjcI.1.24716.seq
#    -bsequence dna-align/BPUM_1119___yjcI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01981___yjcI-BPUM_1119___yjcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01981___yjcI-BPUM_1119___yjcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01981___yjcI
# 2: BPUM_1119___yjcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1183
# Identity:     870/1183 (73.5%)
# Similarity:   870/1183 (73.5%)
# Gaps:         101/1183 ( 8.5%)
# Score: 3212.5
# 
#
#=======================================

BSNT_01981___      1 TTGAAAAGGGAAGGTGTCAGCTATATGTCACAGCACGTTGAAACGAAATT     50
                                             |||.||.|.||.||.|||||||.|||
BPUM_1119___y      1 ------------------------ATGACAGAACATGTGGAAACGACATT     26

BSNT_01981___     51 AGCTCAAATTGGGAACCGTAGCGATGAAGTCACGGGAACAGTGAGTGCTC    100
                     |||.||||||||.|||||||||||.||.|..||.||.||.||.|||.|.|
BPUM_1119___y     27 AGCGCAAATTGGAAACCGTAGCGAAGAGGCGACTGGTACGGTCAGTCCCC     76

BSNT_01981___    101 CTATCTATTTATCAACAGCATACCGCCACAGAGGGATCGGAGAATCTACC    150
                     |..|.|||.|.||||||||||||.|.||.|||||.||.||.|||||.|||
BPUM_1119___y     77 CCGTTTATCTTTCAACAGCATACAGACATAGAGGCATAGGGGAATCAACC    126

BSNT_01981___    151 GGATTTGATTATGTCCGCACAAAAAATCCGACACGCCAGCTTGTTGAGGA    200
                     |||||||||||..|.||.||.|||||.||.|||.|.||||||||.|||||
BPUM_1119___y    127 GGATTTGATTACATTCGAACGAAAAACCCAACAAGGCAGCTTGTAGAGGA    176

BSNT_01981___    201 CGCGATCGC-TAACTTAGAAAACGGCGCGAGAGGGC-----TTGCCTTTA    244
                     .|||||.|| |.|| |.|||.|.||     ||.|||     |||||||.|
BPUM_1119___y    177 TGCGATTGCTTCAC-TCGAAGAAGG-----GACGGCCGGATTTGCCTTCA    220

BSNT_01981___    245 GTTCGGGAATGGCTGCTATCCAAACGATTATGGCGCTGTTTAAAAGCGGA    294
                     ||||||||||||||||.|||||||||||.|.||||||.|||.|||||||.
BPUM_1119___y    221 GTTCGGGAATGGCTGCGATCCAAACGATCAAGGCGCTATTTGAAAGCGGT    270

BSNT_01981___    295 GATGAACTGATCGTTTCATCGGACCTATATGGCGGCACGTACCGTTTATT    344
                     ||||||||.|||||.|||||.||||||||||||||.||.||||||||.||
BPUM_1119___y    271 GATGAACTCATCGTCTCATCAGACCTATATGGCGGTACATACCGTTTGTT    320

BSNT_01981___    345 TGAAAATGAATGGAAAAAATACGGATTGAC-TTTTCATTATGATGA--TT    391
                     ||||||.|||||||||||.|||||.|| || |||||.|||.|||||  ||
BPUM_1119___y    321 TGAAAACGAATGGAAAAAGTACGGCTT-ACGTTTTCTTTACGATGATTTT    369

BSNT_01981___    392 TCAGCGATGAGGACTGTTTACGCTCTAAGATTACGCCGAATACAAAAGCG    441
                     |||  |||||.|||||||||||||||||.||.|||||.||.||||||||.
BPUM_1119___y    370 TCA--GATGAAGACTGTTTACGCTCTAAAATCACGCCAAACACAAAAGCA    417

BSNT_01981___    442 GTGTTTGTGGAAACGCCGACAAACCCCCTTATGCAGGAGGCGGACATTGA    491
                     ||.|||.|.||.|||||||||||.||.||||||||.||.|||||.|||.|
BPUM_1119___y    418 GTCTTTATTGAGACGCCGACAAATCCACTTATGCAAGAAGCGGATATTCA    467

BSNT_01981___    492 ACATATTGCCCGGATTACAAAGGAGCACGG-TCTTCTGCTGATTGTAGAT    540
                     |.|.||.||...||||.||||.||.||.|| .||| ||.|.|||||.|||
BPUM_1119___y    468 AAAAATAGCGAAGATTGCAAAAGAACATGGCGCTT-TGGTCATTGTCGAT    516

BSNT_01981___    541 AATACATTTTATACACCGGTCTTGCAGCGGCCGCTTGAGCTGGGAGCTGA    590
                     ||.||.|||||.||.||.||.|||||...||||.||..|||.|||||.||
BPUM_1119___y    517 AACACCTTTTACACTCCCGTTTTGCAAAAGCCGATTACGCTTGGAGCGGA    566

BSNT_01981___    591 CATTGTCATTCACAGCGCAACCAAGTATTTAGGCGGGCATAACGATCTGC    640
                     ||||||.|||||.|||||||||||.|||||||||||.|||||.||..|.|
BPUM_1119___y    567 CATTGTGATTCATAGCGCAACCAAATATTTAGGCGGACATAATGACGTTC    616

BSNT_01981___    641 TTGCTGGACTTGTCGTGGTG-----AAGGATGAGC----GGCTCGGAGAG    681
                     ||||.||.||||||||         ||||| ||||    |.||    ||.
BPUM_1119___y    617 TTGCAGGGCTTGTCGT----CACAAAAGGA-GAGCAGTTGTCT----GAA    657

BSNT_01981___    682 GAAATGTTTCAGCATCAAAATGCAATCGGCGCCGTCCTGCCGCCATTTGA    731
                     ||.|||||.||||||||||||||.||.||.||.||.||..|.||||||||
BPUM_1119___y    658 GACATGTTCCAGCATCAAAATGCGATTGGAGCAGTTCTATCACCATTTGA    707

BSNT_01981___    732 TTCGTGGCTTCTGATGAGAGGAATGAAGACGCTGAGC-CTCAGAATGCGT    780
                     .||.|||||..|.||||||||.|||||.||.||| || ||.||||||||.
BPUM_1119___y    708 CTCATGGCTATTAATGAGAGGGATGAAAACACTG-GCTCTTAGAATGCGC    756

BSNT_01981___    781 CAGCATCAGGCAAACGCGCAGGAGCTTGCGGCGTTTTTAGAAG-AGCAGG    829
                     |||||..|.|||||.|||||||||||.||||.||||||| ||| |.|||.
BPUM_1119___y    757 CAGCACGAAGCAAATGCGCAGGAGCTAGCGGAGTTTTTA-AAGAAACAGC    805

BSNT_01981___    830 AAGAAATTTCGGATGTGCTGTATCCCGGAAAAGGCGGCATGCTGTCCTTC    879
                     .|||||||...|||||.||.||.||.||.||.||.||.||||||||.|||
BPUM_1119___y    806 CAGAAATTCAAGATGTCCTTTACCCAGGCAAGGGAGGAATGCTGTCTTTC    855

BSNT_01981___    880 CGTCT-GCAAAAAGAAGAATGGGTCAATCCGTTTTTAAAAGCA-CTGAAG    927
                     |||.| || ..||||.||.|||||||||||.||||| |||||| |||||.
BPUM_1119___y    856 CGTGTAGC-CGAAGAGGACTGGGTCAATCCATTTTT-AAAGCAGCTGAAA    903

BSNT_01981___    928 ACCATTTGTTTTGCAGAAAGCCTCGGCGGGGTGGAAAGCTTTATTACATA    977
                     ||.|||||||||||.|||||.||.||.||..|.|||||.|||||.||.||
BPUM_1119___y    904 ACGATTTGTTTTGCTGAAAGTCTTGGAGGAATTGAAAGTTTTATCACGTA    953

BSNT_01981___    978 CCCTGCGACCCAGACGCACATGGATATTCCTGAAGAGATCCGCATCGCAA   1027
                     .||||||||.||.||||||||||||||||||||.||.||.|||||.||||
BPUM_1119___y    954 TCCTGCGACGCAAACGCACATGGATATTCCTGAGGAAATTCGCATTGCAA   1003

BSNT_01981___   1028 ACGGGGTGTG---CAATCGGTTGCTGCGCTTTTCTGTCGGTATTGAACAT   1074
                     ||||.|||||   |||.|   ||||.||.||.||.||.||||||||.|||
BPUM_1119___y   1004 ACGGTGTGTGTAACAAAC---TGCTCCGTTTCTCCGTTGGTATTGAGCAT   1050

BSNT_01981___   1075 GCGGAAGATTTAAAAGAGGATCTAAAACAGGCATTATGTCAGGTCAAAGA   1124
                     |..||.||..|.||.|..||.|||||.||||||.|||..||.||.|||||
BPUM_1119___y   1051 GTAGATGACCTGAAGGCAGACCTAAAGCAGGCACTATCACAAGTAAAAGA   1100

BSNT_01981___   1125 GGGAGCTGTTTCTTTTGAGTAA-----------   1146
                      ||||             |||.           
BPUM_1119___y   1101 -GGAG-------------GTACATGCCAAATGA   1119


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