Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01981 and BPUM_1119
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_01981___yjcI.1.24716.seq
# -bsequence dna-align/BPUM_1119___yjcI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01981___yjcI-BPUM_1119___yjcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01981___yjcI-BPUM_1119___yjcI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01981___yjcI
# 2: BPUM_1119___yjcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1183
# Identity: 870/1183 (73.5%)
# Similarity: 870/1183 (73.5%)
# Gaps: 101/1183 ( 8.5%)
# Score: 3212.5
#
#
#=======================================
BSNT_01981___ 1 TTGAAAAGGGAAGGTGTCAGCTATATGTCACAGCACGTTGAAACGAAATT 50
|||.||.|.||.||.|||||||.|||
BPUM_1119___y 1 ------------------------ATGACAGAACATGTGGAAACGACATT 26
BSNT_01981___ 51 AGCTCAAATTGGGAACCGTAGCGATGAAGTCACGGGAACAGTGAGTGCTC 100
|||.||||||||.|||||||||||.||.|..||.||.||.||.|||.|.|
BPUM_1119___y 27 AGCGCAAATTGGAAACCGTAGCGAAGAGGCGACTGGTACGGTCAGTCCCC 76
BSNT_01981___ 101 CTATCTATTTATCAACAGCATACCGCCACAGAGGGATCGGAGAATCTACC 150
|..|.|||.|.||||||||||||.|.||.|||||.||.||.|||||.|||
BPUM_1119___y 77 CCGTTTATCTTTCAACAGCATACAGACATAGAGGCATAGGGGAATCAACC 126
BSNT_01981___ 151 GGATTTGATTATGTCCGCACAAAAAATCCGACACGCCAGCTTGTTGAGGA 200
|||||||||||..|.||.||.|||||.||.|||.|.||||||||.|||||
BPUM_1119___y 127 GGATTTGATTACATTCGAACGAAAAACCCAACAAGGCAGCTTGTAGAGGA 176
BSNT_01981___ 201 CGCGATCGC-TAACTTAGAAAACGGCGCGAGAGGGC-----TTGCCTTTA 244
.|||||.|| |.|| |.|||.|.|| ||.||| |||||||.|
BPUM_1119___y 177 TGCGATTGCTTCAC-TCGAAGAAGG-----GACGGCCGGATTTGCCTTCA 220
BSNT_01981___ 245 GTTCGGGAATGGCTGCTATCCAAACGATTATGGCGCTGTTTAAAAGCGGA 294
||||||||||||||||.|||||||||||.|.||||||.|||.|||||||.
BPUM_1119___y 221 GTTCGGGAATGGCTGCGATCCAAACGATCAAGGCGCTATTTGAAAGCGGT 270
BSNT_01981___ 295 GATGAACTGATCGTTTCATCGGACCTATATGGCGGCACGTACCGTTTATT 344
||||||||.|||||.|||||.||||||||||||||.||.||||||||.||
BPUM_1119___y 271 GATGAACTCATCGTCTCATCAGACCTATATGGCGGTACATACCGTTTGTT 320
BSNT_01981___ 345 TGAAAATGAATGGAAAAAATACGGATTGAC-TTTTCATTATGATGA--TT 391
||||||.|||||||||||.|||||.|| || |||||.|||.||||| ||
BPUM_1119___y 321 TGAAAACGAATGGAAAAAGTACGGCTT-ACGTTTTCTTTACGATGATTTT 369
BSNT_01981___ 392 TCAGCGATGAGGACTGTTTACGCTCTAAGATTACGCCGAATACAAAAGCG 441
||| |||||.|||||||||||||||||.||.|||||.||.||||||||.
BPUM_1119___y 370 TCA--GATGAAGACTGTTTACGCTCTAAAATCACGCCAAACACAAAAGCA 417
BSNT_01981___ 442 GTGTTTGTGGAAACGCCGACAAACCCCCTTATGCAGGAGGCGGACATTGA 491
||.|||.|.||.|||||||||||.||.||||||||.||.|||||.|||.|
BPUM_1119___y 418 GTCTTTATTGAGACGCCGACAAATCCACTTATGCAAGAAGCGGATATTCA 467
BSNT_01981___ 492 ACATATTGCCCGGATTACAAAGGAGCACGG-TCTTCTGCTGATTGTAGAT 540
|.|.||.||...||||.||||.||.||.|| .||| ||.|.|||||.|||
BPUM_1119___y 468 AAAAATAGCGAAGATTGCAAAAGAACATGGCGCTT-TGGTCATTGTCGAT 516
BSNT_01981___ 541 AATACATTTTATACACCGGTCTTGCAGCGGCCGCTTGAGCTGGGAGCTGA 590
||.||.|||||.||.||.||.|||||...||||.||..|||.|||||.||
BPUM_1119___y 517 AACACCTTTTACACTCCCGTTTTGCAAAAGCCGATTACGCTTGGAGCGGA 566
BSNT_01981___ 591 CATTGTCATTCACAGCGCAACCAAGTATTTAGGCGGGCATAACGATCTGC 640
||||||.|||||.|||||||||||.|||||||||||.|||||.||..|.|
BPUM_1119___y 567 CATTGTGATTCATAGCGCAACCAAATATTTAGGCGGACATAATGACGTTC 616
BSNT_01981___ 641 TTGCTGGACTTGTCGTGGTG-----AAGGATGAGC----GGCTCGGAGAG 681
||||.||.|||||||| ||||| |||| |.|| ||.
BPUM_1119___y 617 TTGCAGGGCTTGTCGT----CACAAAAGGA-GAGCAGTTGTCT----GAA 657
BSNT_01981___ 682 GAAATGTTTCAGCATCAAAATGCAATCGGCGCCGTCCTGCCGCCATTTGA 731
||.|||||.||||||||||||||.||.||.||.||.||..|.||||||||
BPUM_1119___y 658 GACATGTTCCAGCATCAAAATGCGATTGGAGCAGTTCTATCACCATTTGA 707
BSNT_01981___ 732 TTCGTGGCTTCTGATGAGAGGAATGAAGACGCTGAGC-CTCAGAATGCGT 780
.||.|||||..|.||||||||.|||||.||.||| || ||.||||||||.
BPUM_1119___y 708 CTCATGGCTATTAATGAGAGGGATGAAAACACTG-GCTCTTAGAATGCGC 756
BSNT_01981___ 781 CAGCATCAGGCAAACGCGCAGGAGCTTGCGGCGTTTTTAGAAG-AGCAGG 829
|||||..|.|||||.|||||||||||.||||.||||||| ||| |.|||.
BPUM_1119___y 757 CAGCACGAAGCAAATGCGCAGGAGCTAGCGGAGTTTTTA-AAGAAACAGC 805
BSNT_01981___ 830 AAGAAATTTCGGATGTGCTGTATCCCGGAAAAGGCGGCATGCTGTCCTTC 879
.|||||||...|||||.||.||.||.||.||.||.||.||||||||.|||
BPUM_1119___y 806 CAGAAATTCAAGATGTCCTTTACCCAGGCAAGGGAGGAATGCTGTCTTTC 855
BSNT_01981___ 880 CGTCT-GCAAAAAGAAGAATGGGTCAATCCGTTTTTAAAAGCA-CTGAAG 927
|||.| || ..||||.||.|||||||||||.||||| |||||| |||||.
BPUM_1119___y 856 CGTGTAGC-CGAAGAGGACTGGGTCAATCCATTTTT-AAAGCAGCTGAAA 903
BSNT_01981___ 928 ACCATTTGTTTTGCAGAAAGCCTCGGCGGGGTGGAAAGCTTTATTACATA 977
||.|||||||||||.|||||.||.||.||..|.|||||.|||||.||.||
BPUM_1119___y 904 ACGATTTGTTTTGCTGAAAGTCTTGGAGGAATTGAAAGTTTTATCACGTA 953
BSNT_01981___ 978 CCCTGCGACCCAGACGCACATGGATATTCCTGAAGAGATCCGCATCGCAA 1027
.||||||||.||.||||||||||||||||||||.||.||.|||||.||||
BPUM_1119___y 954 TCCTGCGACGCAAACGCACATGGATATTCCTGAGGAAATTCGCATTGCAA 1003
BSNT_01981___ 1028 ACGGGGTGTG---CAATCGGTTGCTGCGCTTTTCTGTCGGTATTGAACAT 1074
||||.||||| |||.| ||||.||.||.||.||.||||||||.|||
BPUM_1119___y 1004 ACGGTGTGTGTAACAAAC---TGCTCCGTTTCTCCGTTGGTATTGAGCAT 1050
BSNT_01981___ 1075 GCGGAAGATTTAAAAGAGGATCTAAAACAGGCATTATGTCAGGTCAAAGA 1124
|..||.||..|.||.|..||.|||||.||||||.|||..||.||.|||||
BPUM_1119___y 1051 GTAGATGACCTGAAGGCAGACCTAAAGCAGGCACTATCACAAGTAAAAGA 1100
BSNT_01981___ 1125 GGGAGCTGTTTCTTTTGAGTAA----------- 1146
|||| |||.
BPUM_1119___y 1101 -GGAG-------------GTACATGCCAAATGA 1119
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