Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01979 and BPUM_1118

See Amino acid alignment / Visit BSNT_01979 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_01979___yjcH.1.24716.seq
#    -bsequence dna-align/BPUM_1118___yjcH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01979___yjcH-BPUM_1118___yjcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01979___yjcH-BPUM_1118___yjcH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01979___yjcH
# 2: BPUM_1118___yjcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 770
# Identity:     512/770 (66.5%)
# Similarity:   512/770 (66.5%)
# Gaps:          76/770 ( 9.9%)
# Score: 1551.0
# 
#
#=======================================

BSNT_01979___      1 ATGGCACCGAAAAACGGCACAGTGCAAGAAAAGAAATTCTT---TTCAAA     47
                     ||||....|||||..||||...|.||||  |||||| .|||   ||||||
BPUM_1118___y      1 ATGGTGAAGAAAACAGGCATTATTCAAG--AAGAAA-CCTTACATTCAAA     47

BSNT_01979___     48 AGAGCTTAACGAGGAAATGA-CCTTGCTTG-TTTATCTGCC-GTCCAACT     94
                     |||.|||...|.|||.|||| ||||  ||| |.|||.|||| || |||.|
BPUM_1118___y     48 AGAACTTGGGGCGGATATGACCCTT--TTGATCTATTTGCCAGT-CAATT     94

BSNT_01979___     95 ACTCCCCGCTTTATAAATACCATGTCATTATCGCGCAGGACGGCCACGAT    144
                     |||||||.|||||||.|||.||||||||.||.||.||.||.||.||.|||
BPUM_1118___y     95 ACTCCCCCCTTTATACATATCATGTCATCATTGCCCAAGATGGTCATGAT    144

BSNT_01979___    145 TATTTCAGGCTGGGGAGAATCGGCAGACAGGTTGAGGAATTGCTGTCGAA    194
                     ||||||.|..|.||.|.|||.||||||||||..||.||||||.|| |.||
BPUM_1118___y    145 TATTTCCGTTTAGGCAAAATAGGCAGACAGGCAGAAGAATTGATG-CAAA    193

BSNT_01979___    195 AC-GCGAAATAGACCGGAGCATTATTATCGGTGTTCCTTATAAGGATGTA    243
                     || ..|||||.||.||....|||||.||.|||||.||||||.|..||||.
BPUM_1118___y    194 ACAAAGAAATGGAACGCTCGATTATCATTGGTGTCCCTTATGAAAATGTC    243

BSNT_01979___    244 AAAGAGCGCAGAAACACCTATCATCCGGAGGGTTCAAAATTTTCGGCTTA    293
                     |.|||..|.||.||.||.||||||||.||.||..||||||||...||.||
BPUM_1118___y    244 ACAGAAAGAAGGAATACGTATCATCCAGATGGCACAAAATTTGAAGCGTA    293

BSNT_01979___    294 TAAACGGTTCATCGCCCATGAGCTCGTTCCTTTTGCAGATGATG-AGTAT    342
                     ||||||.||..|.||..||||.||.||.||||.|...||| |.| |.|||
BPUM_1118___y    294 TAAACGCTTTTTAGCAAATGAACTTGTCCCTTATATTGAT-ACGCACTAT    342

BSNT_01979___    343 CCAACCTATCAGATCGGTTACGGCCGAACGCTGATCGGTGATTCGCTCGG    392
                     |||||||||||.||.||.|..||.||.||..|.||.||||||||.||.||
BPUM_1118___y    343 CCAACCTATCAAATTGGCTCAGGACGCACATTTATTGGTGATTCTCTGGG    392

BSNT_01979___    393 AGCAACCGTGTCACTTATGACAGCGCTTGATTATCCGAATATGTTTGGCA    442
                     .||.||..|.||.||||||||||||.||||||||||...|.|.||||||.
BPUM_1118___y    393 TGCTACGATTTCTCTTATGACAGCGATTGATTATCCTTCTTTATTTGGCG    442

BSNT_01979___    443 ACATCATCATGCAGTCTCCCTATGTTGA-----CAAACACGTACTAGAAG    487
                     ...|.||..||||||||||.||.|||||     ||     ||..||||||
BPUM_1118___y    443 GTCTGATTTTGCAGTCTCCTTACGTTGATGAGTCA-----GTCTTAGAAG    487

BSNT_01979___    488 CCGTAAAACAGTCAGACGATATCAAACACCTCTCTATTTAT---------    528
                     |.||.|||||||| |||        |..|||.|||..||||         
BPUM_1118___y    488 CTGTTAAACAGTC-GAC--------AGCCCTTTCTCATTATGCGATTATC    528

BSNT_01979___    529 CACCAAATCGGAACAAAAGAAACTGACGTCCACACGACAGACGGGAACAT    578
                     ||.|||||.|||....|||||||.|..||..|.||||||||.||..|..|
BPUM_1118___y    529 CATCAAATTGGACTGGAAGAAACGGCTGTGAAAACGACAGATGGTCAAGT    578

BSNT_01979___    579 TCTGGACTTTACAGAACCGAACCGGGAGCTGAAA--CAGCTGCTGGAGAA    626
                     .||.||.||||...||||||||...|| .|.|||  || ||.||.|   |
BPUM_1118___y    579 GCTCGATTTTATTCAACCGAACGACGA-TTTAAAGGCA-CTTCTTG---A    623

BSNT_01979___    627 AAAGCT----TTCCGATTA-TGATTTCGAGCCATTTGACGGAGACCACAA    671
                     |.|| |    |.|.||||| |.|||| |||.||||.||.|||||.||.||
BPUM_1118___y    624 ACAG-TCAGGTGCAGATTATTTATTT-GAGACATTCGAAGGAGATCATAA    671

BSNT_01979___    672 ATGGACATACTGGCAGCCGCTCATCACCCCGGCGCTGAAAAAAATGCT--    719
                     ||||||.|..|||||.||||||||..|.||..|..|.||||.||||||  
BPUM_1118___y    672 ATGGACGTTTTGGCAACCGCTCATTGCGCCTTCTTTAAAAAGAATGCTCC    721

BSNT_01979___    720 --------TTAA--------    723
                             ||||        
BPUM_1118___y    722 CATATTCGTTAATCAACTGA    741


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01979 and BPUM_1118

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
