Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01969 and BPUM_1109
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01969___yjcA.1.24716.seq
# -bsequence dna-align/BPUM_1109___yjcA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01969___yjcA-BPUM_1109___yjcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01969___yjcA-BPUM_1109___yjcA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01969___yjcA
# 2: BPUM_1109___yjcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 400
# Identity: 226/400 (56.5%)
# Similarity: 226/400 (56.5%)
# Gaps: 104/400 (26.0%)
# Score: 592.0
#
#
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BSNT_01969___ 1 GTGGTTATAAATGGGCTGACAATTGTTC--TTCTATCGCTTGCGGT---- 44
||| || ||||.|.|.||||..|
BPUM_1109___y 1 ----------------------TTG-TCATTTCTCTTGTTTGCCCTCGCA 27
BSNT_01969___ 45 --CTTTCGGCTCGCCCGCCTGCTGGTGTTTGACACGATTATGGCGCCGCT 92
||||.|.||..|..|.||..|.||||||||.||.||||..|||||..|
BPUM_1109___y 28 TCCTTTAGACTGACGAGGCTCGTTGTGTTTGATACCATTACTGCGCCTTT 77
BSNT_01969___ 93 TCGCAGTCTGTTTCATGAAGAGAAGGAAGAAAAGG---ATGCGGACGGGA 139
.|||.||.|.|||||||||| |..|||||.||| || ||
BPUM_1109___y 78 CCGCCGTTTATTTCATGAAG---AACAAGAAGAGGTCAAT--------GA 116
BSNT_01969___ 140 ACA--------TTGAAACCTATATCGTGATT-AAGGGAACCGGTGTCAGG 180
||| |.||.||.||||||.|.||| ||||||| |||
BPUM_1109___y 117 ACAAGGTGAAGTAGAGACATATATCATCATTAAAGGGAA--------AGG 158
BSNT_01969___ 181 GC----GTTT---ATTGGTGAATTGCTGAGCTGCTATTGGTGCACAGGCG 223
|| ||.| ||.||.||..||.|.|||||.||||||||.||.||..
BPUM_1109___y 159 GCTGCGGTCTTGGATAGGAGAGCTGTTAAGCTGTTATTGGTGTACTGGTA 208
BSNT_01969___ 224 TGTGGTGCGCCGGCT-------TTTTGAT-TTTATGCCAGGCGTTGATCC 265
|||||||| .|.||| ||.|||| |..||.|.| || |||
BPUM_1109___y 209 TGTGGTGC-ACTGCTGCATTACTTCTGATATACATACTA----TT--TCC 251
BSNT_01969___ 266 CG----CAAGCGGCGCA-GTGGCTGATTTTACTTTTGGCGATCGCCG--G 308
.| || ||| ||||||.|.||||||.||.||.||.|||| |
BPUM_1109___y 252 TGTCATCA------GCATGTGGCTTAATTTACTATTAGCCATTGCCGCAG 295
BSNT_01969___ 309 CCTTGCCGGCATCATAGAAACGCTCGTATCAAAA-TGGCTGCAAGAATAA 357
| .||.|||||.||.|||.|..|.||.|||||| ||| ||.||.||
BPUM_1109___y 296 C--AGCAGGCATTATTGAAGCAATTGTCTCAAAACTGG-TGAAATAA--- 339
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