Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01966 and BPUM_1107

See Amino acid alignment / Visit BSNT_01966 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_01966.1.24716.seq
#    -bsequence dna-align/BPUM_1107___cotW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01966-BPUM_1107___cotW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01966-BPUM_1107___cotW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01966
# 2: BPUM_1107___cotW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity:     224/409 (54.8%)
# Similarity:   224/409 (54.8%)
# Gaps:         113/409 (27.6%)
# Score: 569.0
# 
#
#=======================================

BSNT_01966         1 ------------------------ATGTCCGAAGAAAAAGATGCA-----     21
                                             ||||   |.||||.||.||.|     
BPUM_1107___c      1 TTGACCCTTTCTTTTTCTAACATTATGT---ATGAAAGAGGTGAAATAAT     47

BSNT_01966        22 -----CTGCAAAAAAAC---AAAGAAGAACTAGAAGCAAATA------TC     57
                          ||| ||.|.|||   |||.|.|||.|..||...||||      |.
BPUM_1107___c     48 CGTGGCTG-AAGAGAACGAAAAAAAGGAATTTCAAATCAATACTGAGGTT     96

BSNT_01966        58 GACCCCCTAACGAAACTTCTTGTTTCAGATGTACTGAACAAAAACAATGT    107
                     ||.||..||||||..||||||||....|||.|..|.||||||||||||.|
BPUM_1107___c     97 GATCCATTAACGAGTCTTCTTGTGAGTGATATTTTAAACAAAAACAATAT    146

BSNT_01966       108 AACAGAAGATAAAAAACGC-AACTTATCAGAAGCTCAAA-AACAAGCGAT    155
                     .|||||.|||.|.||| || |||.|.|||||.|.||||| ||.|| .|||
BPUM_1107___c    147 CACAGATGATCAGAAA-GCAAACATTTCAGATGATCAAAGAAGAA-TGAT    194

BSNT_01966       156 TATTACAATGGTAAATGACCTTCAAAAACAGGCTAACGAATTTGTTGAAA    205
                     |.|.|.|.|.||..|.|||.|.|||||..|.||..|.||.||.||  |.|
BPUM_1107___c    195 TTTGAAATTAGTTGAGGACTTACAAAAGAAAGCAGATGACTTCGT--ACA    242

BSNT_01966       206 G----AGTCA--ATAAGAAAAAGGCAGATGCTGAAAAAGCAGAAC-----    244
                     |    || ||  |.|| ||||||||||  |||||...||||.|||     
BPUM_1107___c    243 GCAGCAG-CAGGAGAA-AAAAAGGCAG--GCTGAGGCAGCAAAACATGTC    288

BSNT_01966       245 -AAGAAGCAGCG------CCGCAA--------AAAAGACGTCGAACAACA    279
                      ||||||.||||      ||||||        ||||     ||||...||
BPUM_1107___c    289 GAAGAAGTAGCGCCTGAACCGCAAGTACGTCCAAAA-----CGAAATTCA    333

BSNT_01966       280 CTGAGAGATCGCGTA-----------CGT------CAAAGAAAAAACGAT    312
                     ||..|||||  ||||           |||      ||..||||.||||| 
BPUM_1107___c    334 CTTCGAGAT--CGTATTCAGCAGCGCCGTGATGCGCAGCGAAACAACGA-    380

BSNT_01966       313 AATATTTAA    321
                          ||||
BPUM_1107___c    381 -----TTAA    384


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