Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01966 and BPUM_1107
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01966.1.24716.seq
# -bsequence dna-align/BPUM_1107___cotW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01966-BPUM_1107___cotW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01966-BPUM_1107___cotW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01966
# 2: BPUM_1107___cotW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 224/409 (54.8%)
# Similarity: 224/409 (54.8%)
# Gaps: 113/409 (27.6%)
# Score: 569.0
#
#
#=======================================
BSNT_01966 1 ------------------------ATGTCCGAAGAAAAAGATGCA----- 21
|||| |.||||.||.||.|
BPUM_1107___c 1 TTGACCCTTTCTTTTTCTAACATTATGT---ATGAAAGAGGTGAAATAAT 47
BSNT_01966 22 -----CTGCAAAAAAAC---AAAGAAGAACTAGAAGCAAATA------TC 57
||| ||.|.||| |||.|.|||.|..||...|||| |.
BPUM_1107___c 48 CGTGGCTG-AAGAGAACGAAAAAAAGGAATTTCAAATCAATACTGAGGTT 96
BSNT_01966 58 GACCCCCTAACGAAACTTCTTGTTTCAGATGTACTGAACAAAAACAATGT 107
||.||..||||||..||||||||....|||.|..|.||||||||||||.|
BPUM_1107___c 97 GATCCATTAACGAGTCTTCTTGTGAGTGATATTTTAAACAAAAACAATAT 146
BSNT_01966 108 AACAGAAGATAAAAAACGC-AACTTATCAGAAGCTCAAA-AACAAGCGAT 155
.|||||.|||.|.||| || |||.|.|||||.|.||||| ||.|| .|||
BPUM_1107___c 147 CACAGATGATCAGAAA-GCAAACATTTCAGATGATCAAAGAAGAA-TGAT 194
BSNT_01966 156 TATTACAATGGTAAATGACCTTCAAAAACAGGCTAACGAATTTGTTGAAA 205
|.|.|.|.|.||..|.|||.|.|||||..|.||..|.||.||.|| |.|
BPUM_1107___c 195 TTTGAAATTAGTTGAGGACTTACAAAAGAAAGCAGATGACTTCGT--ACA 242
BSNT_01966 206 G----AGTCA--ATAAGAAAAAGGCAGATGCTGAAAAAGCAGAAC----- 244
| || || |.|| |||||||||| |||||...||||.|||
BPUM_1107___c 243 GCAGCAG-CAGGAGAA-AAAAAGGCAG--GCTGAGGCAGCAAAACATGTC 288
BSNT_01966 245 -AAGAAGCAGCG------CCGCAA--------AAAAGACGTCGAACAACA 279
||||||.|||| |||||| |||| ||||...||
BPUM_1107___c 289 GAAGAAGTAGCGCCTGAACCGCAAGTACGTCCAAAA-----CGAAATTCA 333
BSNT_01966 280 CTGAGAGATCGCGTA-----------CGT------CAAAGAAAAAACGAT 312
||..||||| |||| ||| ||..||||.|||||
BPUM_1107___c 334 CTTCGAGAT--CGTATTCAGCAGCGCCGTGATGCGCAGCGAAACAACGA- 380
BSNT_01966 313 AATATTTAA 321
||||
BPUM_1107___c 381 -----TTAA 384
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