Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01964 and BPUM_1106
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01964___cotX.1.24716.seq
# -bsequence dna-align/BPUM_1106___cotX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01964___cotX-BPUM_1106___cotX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01964___cotX-BPUM_1106___cotX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01964___cotX
# 2: BPUM_1106___cotX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity: 354/498 (71.1%)
# Similarity: 354/498 (71.1%)
# Gaps: 33/498 ( 6.6%)
# Score: 1186.0
#
#
#=======================================
BSNT_01964___ 1 ATGGAATCAAGACCTTACTCATGGGTTGCCCTAGATAATTCATGTACACA 50
|||||.||.|.|||.||.||.|||||.||.||||||..|...||||||||
BPUM_1106___c 1 ATGGATTCTAAACCATATTCTTGGGTCGCTCTAGATCGTAACTGTACACA 50
BSNT_01964___ 51 CC----CGGGTAGCGGCTATAAAAGAGAAGCGGTTTGTCATGACGTTTGT 96
|| ||..|| |..||||.|||||.||||.||||||.|.|.|...|.|
BPUM_1106___c 51 CCACGGCGATTA-CAACTATGAAAGAAAAGCTGTTTGTGACGGCAACTAT 99
BSNT_01964___ 97 TCTGGAGGA-GAAGATGCTAACGCATTTCAAGATTTTGATCAGCTAAGCC 145
|.| ||.|| |||| |||..||.||||||||||||||..|.||
BPUM_1106___c 100 TAT-GATGATGAAG------ACGTCTTGCAAGATTTTGATCAAGTGAG-- 140
BSNT_01964___ 146 T-TAACAAA-CAAACATCTGAAGAAATGATTATCGTTAGAGATTCTTGCG 193
| |.||||| ||.||||||||.|||.|.|||||.||||||||.|||||.|
BPUM_1106___c 141 TGTGACAAAGCAGACATCTGAGGAAGTCATTATTGTTAGAGACTCTTGTG 190
BSNT_01964___ 194 ACATTGATGTTACGTCTACTGACACTCAAGTTGCTGCATCCATTCAAGCC 243
|||||.||||..|.|||..|||..|.||.|||||.|||||.||.||||..
BPUM_1106___c 191 ACATTAATGTCTCTTCTGTTGATGCACAGGTTGCAGCATCTATCCAAGTA 240
BSNT_01964___ 244 GCCCTCCAAACTGCTGTCATTACAATTGTAAACTTATCAATAGCAGACGG 293
||..|.|||||.||..|||||||.|||..||||.|.|||||.||||||||
BPUM_1106___c 241 GCAGTTCAAACAGCGATCATTACCATTACAAACATCTCAATCGCAGACGG 290
BSNT_01964___ 294 TGATTTAGCAGATCAAGTCATCCAAGA---CTTAGTGCAACAATCTGTTA 340
|||||||||.||.|..||||..||||| ||| ||||.|.|.||
BPUM_1106___c 291 TGATTTAGCTGACCGCGTCACTCAAGATCTCTT------ACAAGCCGCTA 334
BSNT_01964___ 341 ---ACAAGCAGTCAAACCGTCAAAAACTAGTGATTGAAAACTCTAGAAAT 387
||||.||..|||||||.||.|||||.||.||.||||||||||||||.
BPUM_1106___c 335 CTCACAAACAAACAAACCGCCAGAAACTTGTCATCGAAAACTCTAGAAAC 384
BSNT_01964___ 388 GTTAATGTCACAACAACCGATACAGATATTGCACTAT--CGATCCAAACA 435
||||..||..||||.|.||||.|.||||| |.|.|| ||||.||||||
BPUM_1106___c 385 GTTACAGTATCAACTATCGATGCGGATAT--CTCGATCGCGATTCAAACA 432
BSNT_01964___ 436 CTGACACAGACACTTGCCGCTACAATTATCGCAGTTGGAATCCTCTAA 483
||.||.||.|||||||..||.|||||..|.|||.|.||.|||||||||
BPUM_1106___c 433 CTTACTCAAACACTTGTTGCGACAATCGTTGCAATCGGTATCCTCTAA 480
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