Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01964 and BPUM_1106

See Amino acid alignment / Visit BSNT_01964 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_01964___cotX.1.24716.seq
#    -bsequence dna-align/BPUM_1106___cotX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01964___cotX-BPUM_1106___cotX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01964___cotX-BPUM_1106___cotX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01964___cotX
# 2: BPUM_1106___cotX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity:     354/498 (71.1%)
# Similarity:   354/498 (71.1%)
# Gaps:          33/498 ( 6.6%)
# Score: 1186.0
# 
#
#=======================================

BSNT_01964___      1 ATGGAATCAAGACCTTACTCATGGGTTGCCCTAGATAATTCATGTACACA     50
                     |||||.||.|.|||.||.||.|||||.||.||||||..|...||||||||
BPUM_1106___c      1 ATGGATTCTAAACCATATTCTTGGGTCGCTCTAGATCGTAACTGTACACA     50

BSNT_01964___     51 CC----CGGGTAGCGGCTATAAAAGAGAAGCGGTTTGTCATGACGTTTGT     96
                     ||    ||..|| |..||||.|||||.||||.||||||.|.|.|...|.|
BPUM_1106___c     51 CCACGGCGATTA-CAACTATGAAAGAAAAGCTGTTTGTGACGGCAACTAT     99

BSNT_01964___     97 TCTGGAGGA-GAAGATGCTAACGCATTTCAAGATTTTGATCAGCTAAGCC    145
                     |.| ||.|| ||||      |||..||.||||||||||||||..|.||  
BPUM_1106___c    100 TAT-GATGATGAAG------ACGTCTTGCAAGATTTTGATCAAGTGAG--    140

BSNT_01964___    146 T-TAACAAA-CAAACATCTGAAGAAATGATTATCGTTAGAGATTCTTGCG    193
                     | |.||||| ||.||||||||.|||.|.|||||.||||||||.|||||.|
BPUM_1106___c    141 TGTGACAAAGCAGACATCTGAGGAAGTCATTATTGTTAGAGACTCTTGTG    190

BSNT_01964___    194 ACATTGATGTTACGTCTACTGACACTCAAGTTGCTGCATCCATTCAAGCC    243
                     |||||.||||..|.|||..|||..|.||.|||||.|||||.||.||||..
BPUM_1106___c    191 ACATTAATGTCTCTTCTGTTGATGCACAGGTTGCAGCATCTATCCAAGTA    240

BSNT_01964___    244 GCCCTCCAAACTGCTGTCATTACAATTGTAAACTTATCAATAGCAGACGG    293
                     ||..|.|||||.||..|||||||.|||..||||.|.|||||.||||||||
BPUM_1106___c    241 GCAGTTCAAACAGCGATCATTACCATTACAAACATCTCAATCGCAGACGG    290

BSNT_01964___    294 TGATTTAGCAGATCAAGTCATCCAAGA---CTTAGTGCAACAATCTGTTA    340
                     |||||||||.||.|..||||..|||||   |||      ||||.|.|.||
BPUM_1106___c    291 TGATTTAGCTGACCGCGTCACTCAAGATCTCTT------ACAAGCCGCTA    334

BSNT_01964___    341 ---ACAAGCAGTCAAACCGTCAAAAACTAGTGATTGAAAACTCTAGAAAT    387
                        ||||.||..|||||||.||.|||||.||.||.||||||||||||||.
BPUM_1106___c    335 CTCACAAACAAACAAACCGCCAGAAACTTGTCATCGAAAACTCTAGAAAC    384

BSNT_01964___    388 GTTAATGTCACAACAACCGATACAGATATTGCACTAT--CGATCCAAACA    435
                     ||||..||..||||.|.||||.|.|||||  |.|.||  ||||.||||||
BPUM_1106___c    385 GTTACAGTATCAACTATCGATGCGGATAT--CTCGATCGCGATTCAAACA    432

BSNT_01964___    436 CTGACACAGACACTTGCCGCTACAATTATCGCAGTTGGAATCCTCTAA    483
                     ||.||.||.|||||||..||.|||||..|.|||.|.||.|||||||||
BPUM_1106___c    433 CTTACTCAAACACTTGTTGCGACAATCGTTGCAATCGGTATCCTCTAA    480


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