Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01963 and BPUM_1105

See Amino acid alignment / Visit BSNT_01963 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_01963___cotY.1.24716.seq
#    -bsequence dna-align/BPUM_1105___cotY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01963___cotY-BPUM_1105___cotY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01963___cotY-BPUM_1105___cotY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01963___cotY
# 2: BPUM_1105___cotY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity:     388/498 (77.9%)
# Similarity:   388/498 (77.9%)
# Gaps:          15/498 ( 3.0%)
# Score: 1448.0
# 
#
#=======================================

BSNT_01963___      1 ATGAGCTGCGGAAAAACCCATGGCCGGC---ATGAGAACTGTGTATGCGA     47
                     |||||||||||||||..|||||||||.|   ||||.||||||||||||||
BPUM_1105___c      1 ATGAGCTGCGGAAAACACCATGGCCGACATGATGAAAACTGTGTATGCGA     50

BSNT_01963___     48 TGCAGTGGAAAAGATTTTAGCAGAGCAGGAGGCAGTTGAGGAACAGTGTC     97
                     |||.||.||.||||||||||||||||||||.||.||.||.||..|.||||
BPUM_1105___c     51 TGCGGTTGATAAGATTTTAGCAGAGCAGGAAGCTGTAGAAGATAAATGTC    100

BSNT_01963___     98 CGACTGGCTGCTATACAAACCTTTTGAATCCGACAATTGCAGGTAAAGAC    147
                     |.||..|||||||.|..||..|.||.|..||||||.||.|.||.|||||.
BPUM_1105___c    101 CTACAAGCTGCTACAGTAATTTATTAAGCCCGACAGTTTCTGGAAAAGAT    150

BSNT_01963___    148 ACAATTCCGTTTCT-CTTGTTTGATAAAAAAGGCGGATTGTTCTCCACAT    196
                     ||.|||||||||.| ||| |||||||||||.|||||||||||.||.||.|
BPUM_1105___c    151 ACCATTCCGTTTTTACTT-TTTGATAAAAAGGGCGGATTGTTTTCTACTT    199

BSNT_01963___    197 TCGGAAACGTGGGGGGATTTGTGGATGATATG-CAATGCTTTGAATCCAT    245
                     ||||||||.|.||.||||||||.||.||| || ||||||||.||||||||
BPUM_1105___c    200 TCGGAAACATTGGAGGATTTGTTGACGAT-TGCCAATGCTTCGAATCCAT    248

BSNT_01963___    246 TTTCTTCCGCGTTGAAAAATTATGCGACTGCTGCGCAACACTGTCTATTT    295
                     |||||||||.||||||||||||..|||||||||.||.||..|.|||.|.|
BPUM_1105___c    249 TTTCTTCCGGGTTGAAAAATTAAACGACTGCTGTGCTACGTTATCTGTAT    298

BSNT_01963___    296 TACGCCCTGTCGATGTCAAAGGCGATACCTTAAGTGTTTGCCACCCTTGC    345
                     ||.|.|||||.|||||..|.||..||||..|.||.|||||.||||||||.
BPUM_1105___c    299 TAAGACCTGTTGATGTACACGGACATACGCTGAGCGTTTGTCACCCTTGT    348

BSNT_01963___    346 GACCCGGATTTCTTCGGGCTAGAAAAAACAGATTTCTGCATTGAAGTGGA    395
                     |||||.||.|||||.||..||||.||||||||.||.||.||.||.||.||
BPUM_1105___c    349 GACCCTGACTTCTTTGGTTTAGAGAAAACAGACTTTTGTATCGAGGTTGA    398

BSNT_01963___    396 TCTCGGATGCTTCTGCGCGATTCAGTGCCTGTCA--CCAGAGCTAGTTGA    443
                     |||....|||||||||||.||.||.||  |.|.|  |||||.|||||.||
BPUM_1105___c    399 TCTAAACTGCTTCTGCGCAATCCAATG--TTTAAACCCAGAACTAGTAGA    446

BSNT_01963___    444 CAGA-ACATCGCCTCAC-AAAGATAAAAAGCATCATCACAATGGATAA    489
                     |||| .||| ||| .|| |||||||||||||||||||||.|.||.|||
BPUM_1105___c    447 CAGAGTCAT-GCC-AACGAAAGATAAAAAGCATCATCACCACGGCTAA    492


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.