Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01959 and BPUM_1102
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01959___yjbX.1.24716.seq
# -bsequence dna-align/BPUM_1102___yjbX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01959___yjbX-BPUM_1102___yjbX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01959___yjbX-BPUM_1102___yjbX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01959___yjbX
# 2: BPUM_1102___yjbX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 732
# Identity: 421/732 (57.5%)
# Similarity: 421/732 (57.5%)
# Gaps: 171/732 (23.4%)
# Score: 1155.5
#
#
#=======================================
BSNT_01959___ 1 ATGTCTAATAA----GAAAAGAAACGCGGATAAAAAACCGCTCATGTATA 46
|||||.||||| ||..||||.| |.||.|||||.|||||||
BPUM_1102___y 1 ATGTCAAATAAAGGTGATGAGAACC-------AGAAGCCGCTTATGTATA 43
BSNT_01959___ 47 TTGTTCAGCCGGATTATGCAGAAACTACAAGGTCATCCATGCAGGAGATT 96
|||||||||||...||||..||| .|||.|.||.|||||||..|.||.
BPUM_1102___y 44 TTGTTCAGCCGAGCTATGATGAA---TCAATGCCAGCCATGCAAAATATC 90
BSNT_01959___ 97 GTCATCAAAAGAAAG---GCCGACAAACCCGCTCCGCCAAAAG------C 137
||.|..|||.||||| .|.||.||| |||.||| |
BPUM_1102___y 91 GTAAGAAAACGAAAGAAATCAGAAAAA---------CCACAAGAAATGTC 131
BSNT_01959___ 138 TGAG----GAAAAGCCGGCTTACCATGAGAAGGA-----GCAGGAGGAAG 178
|.|| .|||||.| |..||| ||||.| |||.|||||..
BPUM_1102___y 132 TAAGAGTAAAAAAGAC-----AAGATG-GAAGAAAGTACGCACGAGGACC 175
BSNT_01959___ 179 CTGTGGCACAGGATGTCCTGCAAGAAGACCAA--AAGCCTGCAGCCGAAC 226
|.||.||.||.||..| |.|.||||..|| ||||| .||||| |
BPUM_1102___y 176 CCGTTGCTCAAGAAAT----CGAAAAGAAAAAAGAAGCC--GAGCCG--C 217
BSNT_01959___ 227 CAGTGAGTCAGCAAATACAAGAGGTGA---GAGAGCCAGAGAACAT---- 269
|.|.|.||||||||.|.|||||..||| .||| .|.|||.|||
BPUM_1102___y 218 CTGCGCGTCAGCAAGTGCAAGACATGATTCAAGA--AACAGATCATACCC 265
BSNT_01959___ 270 ---AAAAAGCCAGGAGGAACAGAAACAAGAGCCGCAGGCCGT------AG 310
||.|||.||..|.||| || |||.||||| | ||
BPUM_1102___y 266 AAGAAGAAGACATCACGAA-AG-AACCAGAGC---------TTATACAAG 304
BSNT_01959___ 311 AAGAAACCGTTGAACACGAGCCCCCAAAAGCAGAAAAAAAGGAAGAGCCT 360
||.||| |||.||||| .|.||.|||||.||||
BPUM_1102___y 305 AACAAA------AACCCGAGC------------GAGAAGAGGAAAAGCC- 335
BSNT_01959___ 361 GCACTTGAGGCCCGGAAG--------CCTGA---GAAAGAACCGGAAGCT 399
.||.|||| |.||| .|||||| |||.||
BPUM_1102___y 336 ----------GCCAGAAGGTGTATTTCATGAAACAAAAGAA---GAACCT 372
BSNT_01959___ 400 GTCCATAGTGCTGATAAAGCGGAGGAAAAAGCACCGCCGGCACGAAAAGT 449
.||.|||||.| |||
BPUM_1102___y 373 --------------------AGAAGAAAACG----------------AGT 386
BSNT_01959___ 450 GAAAAAACCGATGAGCAAGATGACGATCCACGAAAAAATTGATTTTTTAA 499
||||||.||..|.||..||||||..||..||||||||.|.||||||.|.|
BPUM_1102___y 387 GAAAAAGCCTTTAAGTCAGATGAGTATTGACGAAAAAGTCGATTTTCTCA 436
BSNT_01959___ 500 CAAAGCTGCCTCATAACATGCCGAGAGCGCTTTGTTTGATTGAAGCCAAT 549
|||..|||||||||||.|||||.|||||.|||||..||||||||||..||
BPUM_1102___y 437 CAAGCCTGCCTCATAATATGCCAAGAGCCCTTTGCCTGATTGAAGCTGAT 486
BSNT_01959___ 550 GGAAGAACGTACAGGGGCGTGATTGTCGGA---AGAAGAAATGATTCCGT 596
||.|.|||.||.||.||..|.|||.| ||| |.||||| |||.|.||
BPUM_1102___y 487 GGTAAAACATATAGAGGGATTATTAT-GGATCGAAAAGAA--GATACAGT 533
BSNT_01959___ 597 CCTGCTTCGAACAACCGGAAACGGAGCCCCAACCGAACTGGCAATCGATG 646
..|..||||||||.|.||....|||...|||...|||.|.|||||.||||
BPUM_1102___y 534 GGTCATTCGAACAGCGGGCGGGGGAAATCCAGTTGAATTAGCAATAGATG 583
BSNT_01959___ 647 ATATTACCTCTTTGCACCCGCTCGGTTTTTAA 678
|.|||.||||..|.||.|||||.|||||||||
BPUM_1102___y 584 ACATTTCCTCGATTCATCCGCTTGGTTTTTAA 615
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