Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01956 and BPUM_1100

See Amino acid alignment / Visit BSNT_01956 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_01956___yjbV.1.24716.seq
#    -bsequence dna-align/BPUM_1100___thiDA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01956___yjbV-BPUM_1100___thiDA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01956___yjbV-BPUM_1100___thiDA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01956___yjbV
# 2: BPUM_1100___thiDA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity:     573/894 (64.1%)
# Similarity:   573/894 (64.1%)
# Gaps:         165/894 (18.5%)
# Score: 1826.0
# 
#
#=======================================

BSNT_01956___      1 ATGAGTATATATAAAGCATTGACAATCGCCGGATCAGATTCAGGCGGCGG     50
                     ||||..||..|.||||||||.||||||||.||.||.|||||.||||||||
BPUM_1100___t      1 ATGACGATCAAAAAAGCATTCACAATCGCGGGTTCTGATTCTGGCGGCGG     50

BSNT_01956___     51 CGCAGGGATACAGGCTGATATTAAAACCTTTCAAGAGCTTGATGTATTCG    100
                     .|||||.||.||.||||||.|.|||||||||||.|||||.|.|||.||||
BPUM_1100___t     51 AGCAGGCATTCAAGCTGATTTAAAAACCTTTCAGGAGCTCGGTGTGTTCG    100

BSNT_01956___    101 GAATGTCTGCGATTACAGCGGTAACCGCTCAAAATACGCTTGGCGTTCAT    150
                     |||||||||||||.||||||.|.||.||.|||||.||..|.||.|||||.
BPUM_1100___t    101 GAATGTCTGCGATCACAGCGATTACTGCACAAAACACATTAGGGGTTCAC    150

BSNT_01956___    151 GGGGTGCATCCGCTG----ACTGTAGAGGCGCTGAGACAG-CAAATTGAC    195
                     |||||..||||||||    ||    |||||| |.|||.|| ||||||||.
BPUM_1100___t    151 GGGGTATATCCGCTGTCAAAC----GAGGCG-TTAGAAAGTCAAATTGAT    195

BSNT_01956___    196 GCTGTTGCTGAGGATTTGAGACCGGATGCAGTCAAAACGGGAATGCTCTG    245
                     ||.||.||.||||||||....||.|||||.||||||||.||.|||||.||
BPUM_1100___t    196 GCAGTGGCAGAGGATTTATTGCCAGATGCCGTCAAAACAGGGATGCTGTG    245

BSNT_01956___    246 GAATGCCGACATGATTGAAGA-AGTGGCAAGAAAAATTGACGAGTACGGA    294
                     ||..||.||||||| |.|||| |||.|| .||.|||         |||| 
BPUM_1100___t    246 GAGCGCAGACATGA-TCAAGATAGTTGC-TGATAAA---------ACGG-    283

BSNT_01956___    295 TTCAATCGTG---------TAATTGTTGATCCGGTTATGATCGCAAAGGG    335
                     |||||| .||         |.|||||.|||||.||.|||||||||||.||
BPUM_1100___t    284 TTCAAT-ATGATATGAAGCTCATTGTCGATCCAGTGATGATCGCAAAAGG    332

BSNT_01956___    336 CGGGGCATCCTT----------GCTGCGTGATGAGTCAGTTG---CCACC    372
                     .||.||.||.||          |.||||..||.||  .||||   .||| 
BPUM_1100___t    333 AGGCGCTTCTTTATTAAATGAAGATGCGGTATCAG--CGTTGAAAACAC-    379

BSNT_01956___    373 TTAAAGGAGTTGCT--CATTCCAAGAAGCTACGCGATTACGCCGAATGTC    420
                            |.|||||  |..||     |||||.||..|.|||||||||.|.
BPUM_1100___t    380 -------ACTTGCTGCCTGTC-----AGCTATGCCGTAACGCCGAATCTA    417

BSNT_01956___    421 CCGGAAGCAGAAACGCTGACAGGAATG-ACAATCAGCTCGCTGGATGACC    469
                     ||.|||||||||...||||||||.||| |.|.|||           ||| 
BPUM_1100___t    418 CCTGAAGCAGAAGTACTGACAGGCATGCATATTCA-----------GAC-    455

BSNT_01956___    470 GGAAAAA--------------AGCAGCAGAGCAGCTCGTCAAGATG----    501
                        ||||              ||||||.|||     |||..|.|||    
BPUM_1100___t    456 ---AAAAGAAGATCGCTATCTAGCAGCGGAG-----CGTTTATATGAGCT    497

BSNT_01956___    502 -GGTGCGCAGCATGTCATTATCAAAGGCGGGCACCAGCCTGAGGACAATC    550
                      |||.||.|.||||||.|.|||||||||||.|||        ||.|.|||
BPUM_1100___t    498 AGGTACGAAACATGTCGTGATCAAAGGCGGTCAC--------GGTCCATC    539

BSNT_01956___    551 --------ACATTACTGACCTTCTTTTTGATGGCA---GCATGTTTATGC    589
                             |.|||||.|||||..|.|.||||||.|   ||   |||||..
BPUM_1100___t    540 TGGCGGGAAGATTACAGACCTGTTGTATGATGGAAAGGGC---TTTATAG    586

BSNT_01956___    590 AAATCAC---CCATCCTTATATCAATACGAAGCATACGCATGGCACAGGC    636
                     ||.||||   |.|.|   ||||..||||...||||||.||||||||||||
BPUM_1100___t    587 AAGTCACAAACGAAC---ATATTGATACTCCGCATACCCATGGCACAGGC    633

BSNT_01956___    637 TGCACCTTTGCTGCGGCTTTAACGGCCCAAACGGCTAAAGGAGACAGCAT    686
                     |||||.|||||.|||||.|||||.||..|||..||.||||||.||    |
BPUM_1100___t    634 TGCACGTTTGCAGCGGCATTAACAGCTGAAATTGCGAAAGGATAC----T    679

BSNT_01956___    687 CCAT----CAGGCATTTGAGGTTGCGGCCAACTTTGTCCGTGAAGCGGTG    732
                     ||||    .||||.|||||....||.|..|.||||||||.||||||..|.
BPUM_1100___t    680 CCATGAGGGAGGCTTTTGACACAGCAGAAACCTTTGTCCATGAAGCCATC    729

BSNT_01956___    733 GAA---------AATACGCTCGGCATCGGATCGGGACACGGGCCGACAAA    773
                     .||         |||         ||.|||.|.||||||||.||.||.||
BPUM_1100___t    730 AAATTTCCTTTGAAT---------ATTGGAGCTGGACACGGACCTACCAA    770

BSNT_01956___    774 CCATTTCGCTTTTAAACGAAA-CAGCTTAAATACAAGCCGATGA    816
                     ||||||.||.|.|.|||.||| |.|||.|||       ||||.|
BPUM_1100___t    771 CCATTTTGCATATCAACAAAACCGGCTCAAA-------CGATAA    807


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