Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01954 and BPUM_1099
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_01954___thiF.1.24716.seq
# -bsequence dna-align/BPUM_1099___thiF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01954___thiF-BPUM_1099___thiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01954___thiF-BPUM_1099___thiF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01954___thiF
# 2: BPUM_1099___thiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1096
# Identity: 681/1096 (62.1%)
# Similarity: 681/1096 (62.1%)
# Gaps: 167/1096 (15.2%)
# Score: 1949.5
#
#
#=======================================
BSNT_01954___ 1 ATGACGGGCA---GGTATTCAAGGCAGGAGCTGTTTGCTCCGATCGGCCC 47
.||| ||| |.||||||.|.||.|||||.|||...||.||.|||.|
BPUM_1099___t 1 TTGA---GCACACGTTATTCACGCCAAGAGCTCTTTCAGCCAATTGGCAC 47
BSNT_01954___ 48 ATCCGGCCAGAAA------AAAT---TGAAAGAAGCGCGCGCCGTGATTA 88
|...||.|| ||| |||| |.|||| |||||.||||
BPUM_1099___t 48 AGAGGGACA-AAAGCGGTTAAATGACTCAAAG--------GCCGTCATTA 88
BSNT_01954___ 89 TCGGCGCCGGCGCGCTCGGAACAGCCAGTGCAGAAATGCTGGTGAGAGCG 138
|.|||||.||.|||||.||||||||.|||||.||||||||.||..|.||.
BPUM_1099___t 89 TTGGCGCAGGAGCGCTTGGAACAGCTAGTGCGGAAATGCTTGTTCGTGCT 138
BSNT_01954___ 139 GGAGTCGGCCATGTGAAAATTGCCGACAGAGATTATGTTGAATGGAGCAA 188
||.||.||...|||.|..|||...||..||||||||.|||||||||||||
BPUM_1099___t 139 GGCGTTGGATCTGTCACCATTTTGGATCGAGATTATATTGAATGGAGCAA 188
BSNT_01954___ 189 CCTCCAGCGCCAGCAGCTTTATACAGAAGATGATGTCAAAAAAGAAATGC 238
|||.|||||.||.||||||||.|.|||..|.|||| |||
BPUM_1099___t 189 CCTTCAGCGTCAACAGCTTTACATAGAGCAAGATG------------TGC 226
BSNT_01954___ 239 CGAAAGCAGCCGCTGCGGAGCGCCAT----------------CTCCGTTC 272
||.|.|.|||||..|..||||| |||.....
BPUM_1099___t 227 ----AGGATCGGCTGCCAAAGGCCATAGCGGCTGAAAAAAGACTCAAACA 272
BSNT_01954___ 273 GATTAACAGCGATGTTGATGTGACCGGCCTTGTCATGGATGTGACAGCAG 322
|||.||.||.||.||..|.||.|..||..|.|||.|.||||||||.||.|
BPUM_1099___t 273 GATAAATAGTGACGTGCAGGTCAAAGGAATCGTCGTCGATGTGACCGCTG 322
BSNT_01954___ 323 AAAATATCTTCGAGCTGATTAGGGATGCATCGATTATTGTGGATGCGGCT 372
||.|.||....||.||..|.||.|..||.||.||||||||.|||||.||.
BPUM_1099___t 323 AACAGATTGATGAACTAGTCAGCGGCGCTTCAATTATTGTCGATGCAGCG 372
BSNT_01954___ 373 GATAATTTTGA------AACCCGCCTGATCGTAAATGATGCTGCGGTAAA 416
||||||||||| || ||||||..||||||||.||.||.||
BPUM_1099___t 373 GATAATTTTGAGGTGAGAA------TGATCGCTAATGATGCGGCTGTCAA 416
BSNT_01954___ 417 GGAAGGGATTCCTTTTCTTTACGGTGCCTGTGTAGGGAGCTACGG-CCTC 465
..|....|||||.||.|||||.||.||.||.||.|..||.||.|| ..||
BPUM_1099___t 417 ACATCAAATTCCATTCCTTTATGGAGCTTGCGTTGCCAGTTATGGTATTC 466
BSNT_01954___ 466 ACCTTTACCGTGGTGCCGGGTTCTACTCCTTGCCTGCATTGCTTGCTCGA 515
| .|||||.||..|.||.||....||.||.||..|.||.|||.||||.||
BPUM_1099___t 467 A-ATTTACTGTCATTCCTGGGCAAACACCGTGTTTACACTGCCTGCTTGA 515
BSNT_01954___ 516 TACACTT-CCGATTGGCGGA--GCA--ACATGTGACACAGCCGGCATCAT 560
|||.|| || .||..| ||| ||||||||.||||||||.|||||
BPUM_1099___t 516 -ACATTTACC----TGCACAAGGCATGACATGTGATACAGCCGGTATCAT 560
BSNT_01954___ 561 CAGTCCGGCTGTTTTGCAGGTAGCAGTC-TTTCAGGTAACAGATGCACTG 609
.|||||.|.|||...||||||.||| || |.|||.||..|||||||.|||
BPUM_1099___t 561 TAGTCCAGTTGTGCAGCAGGTCGCA-TCATATCAAGTGGCAGATGCCCTG 609
BSNT_01954___ 610 AAGCTGCTGACGGG-----AGAGGAGTGCGA-GCCGATGCTGCGCTCCTT 653
|||....|.||.|| | ||| || ||||||..|..|.|||||
BPUM_1099___t 610 AAGTATTTAACCGGTCATCA----AGT--GACGCCGATTTTAAGATCCTT 653
BSNT_01954___ 654 TGATTTGTGGAAAAATGAGCGGTCGGAAGTGAGAGCGGCCAGTCTC---- 699
||||||.||||..||||||||.||.||..|..||.|.||||| |||
BPUM_1099___t 654 TGATTTATGGAGCAATGAGCGTTCTGACATTCGATCAGCCAG-CTCCTTA 702
BSNT_01954___ 700 ------AAACATGACGCATGCCCAAGCTGTGGCACAAAGGA----TTTTC 739
||||| |||.|||||.||.|| ||.|| .|.||
BPUM_1099___t 703 AAGAAAAAACA------ATGTCCAAGTTGCGG----AATGAAAACATATC 742
BSNT_01954___ 740 CGTTTTTGTCATATGAAAATCAAACAAAAGCGGCTGTATTGTGCGGCAGG 789
|.|||.|.||.|||||.||...|.||||.||.|.||||.|.||||||.|.
BPUM_1099___t 743 CTTTTCTTTCCTATGACAAGAGAGCAAAGGCAGATGTACTATGCGGCCGC 792
BSNT_01954___ 790 AACACGGTGCAGATCAGA------------------TCATCTATTACGAA 821
||.|||||.||.|||.|| .|.|| |||| ||
BPUM_1099___t 793 AATACGGTCCAAATCCGAAGTGCAGCCGAAACTCCGCCGTC-ATTA--AA 839
BSNT_01954___ 822 AGAAGCGGATCTTGAAGCGCTTGCCGCTCAGCTGAGGCAGGCCGGGCTTG 871
|||||.| ||||..||.| |.|.|.|.||.|||.|.|
BPUM_1099___t 840 AGAAGTG-----------GCTTTTCGAT----TAAAGAAAGCAGGGATGG 874
BSNT_01954___ 872 AAGTAGCTGCGAACCCGTATTTAATTTCCTGCCGCTC----GGATG-ATA 916
|.||...||..||.||||||||..||||||| || ||||| |||
BPUM_1099___t 875 ATGTCCTTGAAAATCCGTATTTGCTTTCCTG----TCAAAAGGATGAATA 920
BSNT_01954___ 917 TGAAAATGGTGCTGTTCCGGGACGGCAGAGC-TTTGATCCATGGAACAAA 965
| ||..|.||..||||....|||||.||||| .||| |||||||.|||||
BPUM_1099___t 921 T-AAGCTTGTCTTGTTTAAAGACGGTAGAGCACTTG-TCCATGGCACAAA 968
BSNT_01954___ 966 TGATATTGCCCGGGCAAAATCCATTTATCATAAATGGATTGGGTAA 1011
||||||.|||...||||.|.|||||||||||.||||||||||.|||
BPUM_1099___t 969 TGATATCGCCAAAGCAAGAACCATTTATCATCAATGGATTGGCTAA 1014
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