Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01954 and BPUM_1099

See Amino acid alignment / Visit BSNT_01954 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_01954___thiF.1.24716.seq
#    -bsequence dna-align/BPUM_1099___thiF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01954___thiF-BPUM_1099___thiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01954___thiF-BPUM_1099___thiF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01954___thiF
# 2: BPUM_1099___thiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1096
# Identity:     681/1096 (62.1%)
# Similarity:   681/1096 (62.1%)
# Gaps:         167/1096 (15.2%)
# Score: 1949.5
# 
#
#=======================================

BSNT_01954___      1 ATGACGGGCA---GGTATTCAAGGCAGGAGCTGTTTGCTCCGATCGGCCC     47
                     .|||   |||   |.||||||.|.||.|||||.|||...||.||.|||.|
BPUM_1099___t      1 TTGA---GCACACGTTATTCACGCCAAGAGCTCTTTCAGCCAATTGGCAC     47

BSNT_01954___     48 ATCCGGCCAGAAA------AAAT---TGAAAGAAGCGCGCGCCGTGATTA     88
                     |...||.|| |||      ||||   |.||||        |||||.||||
BPUM_1099___t     48 AGAGGGACA-AAAGCGGTTAAATGACTCAAAG--------GCCGTCATTA     88

BSNT_01954___     89 TCGGCGCCGGCGCGCTCGGAACAGCCAGTGCAGAAATGCTGGTGAGAGCG    138
                     |.|||||.||.|||||.||||||||.|||||.||||||||.||..|.||.
BPUM_1099___t     89 TTGGCGCAGGAGCGCTTGGAACAGCTAGTGCGGAAATGCTTGTTCGTGCT    138

BSNT_01954___    139 GGAGTCGGCCATGTGAAAATTGCCGACAGAGATTATGTTGAATGGAGCAA    188
                     ||.||.||...|||.|..|||...||..||||||||.|||||||||||||
BPUM_1099___t    139 GGCGTTGGATCTGTCACCATTTTGGATCGAGATTATATTGAATGGAGCAA    188

BSNT_01954___    189 CCTCCAGCGCCAGCAGCTTTATACAGAAGATGATGTCAAAAAAGAAATGC    238
                     |||.|||||.||.||||||||.|.|||..|.||||            |||
BPUM_1099___t    189 CCTTCAGCGTCAACAGCTTTACATAGAGCAAGATG------------TGC    226

BSNT_01954___    239 CGAAAGCAGCCGCTGCGGAGCGCCAT----------------CTCCGTTC    272
                         ||.|.|.|||||..|..|||||                |||.....
BPUM_1099___t    227 ----AGGATCGGCTGCCAAAGGCCATAGCGGCTGAAAAAAGACTCAAACA    272

BSNT_01954___    273 GATTAACAGCGATGTTGATGTGACCGGCCTTGTCATGGATGTGACAGCAG    322
                     |||.||.||.||.||..|.||.|..||..|.|||.|.||||||||.||.|
BPUM_1099___t    273 GATAAATAGTGACGTGCAGGTCAAAGGAATCGTCGTCGATGTGACCGCTG    322

BSNT_01954___    323 AAAATATCTTCGAGCTGATTAGGGATGCATCGATTATTGTGGATGCGGCT    372
                     ||.|.||....||.||..|.||.|..||.||.||||||||.|||||.||.
BPUM_1099___t    323 AACAGATTGATGAACTAGTCAGCGGCGCTTCAATTATTGTCGATGCAGCG    372

BSNT_01954___    373 GATAATTTTGA------AACCCGCCTGATCGTAAATGATGCTGCGGTAAA    416
                     |||||||||||      ||      ||||||..||||||||.||.||.||
BPUM_1099___t    373 GATAATTTTGAGGTGAGAA------TGATCGCTAATGATGCGGCTGTCAA    416

BSNT_01954___    417 GGAAGGGATTCCTTTTCTTTACGGTGCCTGTGTAGGGAGCTACGG-CCTC    465
                     ..|....|||||.||.|||||.||.||.||.||.|..||.||.|| ..||
BPUM_1099___t    417 ACATCAAATTCCATTCCTTTATGGAGCTTGCGTTGCCAGTTATGGTATTC    466

BSNT_01954___    466 ACCTTTACCGTGGTGCCGGGTTCTACTCCTTGCCTGCATTGCTTGCTCGA    515
                     | .|||||.||..|.||.||....||.||.||..|.||.|||.||||.||
BPUM_1099___t    467 A-ATTTACTGTCATTCCTGGGCAAACACCGTGTTTACACTGCCTGCTTGA    515

BSNT_01954___    516 TACACTT-CCGATTGGCGGA--GCA--ACATGTGACACAGCCGGCATCAT    560
                      |||.|| ||    .||..|  |||  ||||||||.||||||||.|||||
BPUM_1099___t    516 -ACATTTACC----TGCACAAGGCATGACATGTGATACAGCCGGTATCAT    560

BSNT_01954___    561 CAGTCCGGCTGTTTTGCAGGTAGCAGTC-TTTCAGGTAACAGATGCACTG    609
                     .|||||.|.|||...||||||.||| || |.|||.||..|||||||.|||
BPUM_1099___t    561 TAGTCCAGTTGTGCAGCAGGTCGCA-TCATATCAAGTGGCAGATGCCCTG    609

BSNT_01954___    610 AAGCTGCTGACGGG-----AGAGGAGTGCGA-GCCGATGCTGCGCTCCTT    653
                     |||....|.||.||     |    |||  || ||||||..|..|.|||||
BPUM_1099___t    610 AAGTATTTAACCGGTCATCA----AGT--GACGCCGATTTTAAGATCCTT    653

BSNT_01954___    654 TGATTTGTGGAAAAATGAGCGGTCGGAAGTGAGAGCGGCCAGTCTC----    699
                     ||||||.||||..||||||||.||.||..|..||.|.||||| |||    
BPUM_1099___t    654 TGATTTATGGAGCAATGAGCGTTCTGACATTCGATCAGCCAG-CTCCTTA    702

BSNT_01954___    700 ------AAACATGACGCATGCCCAAGCTGTGGCACAAAGGA----TTTTC    739
                           |||||      |||.|||||.||.||    ||.||    .|.||
BPUM_1099___t    703 AAGAAAAAACA------ATGTCCAAGTTGCGG----AATGAAAACATATC    742

BSNT_01954___    740 CGTTTTTGTCATATGAAAATCAAACAAAAGCGGCTGTATTGTGCGGCAGG    789
                     |.|||.|.||.|||||.||...|.||||.||.|.||||.|.||||||.|.
BPUM_1099___t    743 CTTTTCTTTCCTATGACAAGAGAGCAAAGGCAGATGTACTATGCGGCCGC    792

BSNT_01954___    790 AACACGGTGCAGATCAGA------------------TCATCTATTACGAA    821
                     ||.|||||.||.|||.||                  .|.|| ||||  ||
BPUM_1099___t    793 AATACGGTCCAAATCCGAAGTGCAGCCGAAACTCCGCCGTC-ATTA--AA    839

BSNT_01954___    822 AGAAGCGGATCTTGAAGCGCTTGCCGCTCAGCTGAGGCAGGCCGGGCTTG    871
                     |||||.|           ||||..||.|    |.|.|.|.||.|||.|.|
BPUM_1099___t    840 AGAAGTG-----------GCTTTTCGAT----TAAAGAAAGCAGGGATGG    874

BSNT_01954___    872 AAGTAGCTGCGAACCCGTATTTAATTTCCTGCCGCTC----GGATG-ATA    916
                     |.||...||..||.||||||||..|||||||    ||    ||||| |||
BPUM_1099___t    875 ATGTCCTTGAAAATCCGTATTTGCTTTCCTG----TCAAAAGGATGAATA    920

BSNT_01954___    917 TGAAAATGGTGCTGTTCCGGGACGGCAGAGC-TTTGATCCATGGAACAAA    965
                     | ||..|.||..||||....|||||.||||| .||| |||||||.|||||
BPUM_1099___t    921 T-AAGCTTGTCTTGTTTAAAGACGGTAGAGCACTTG-TCCATGGCACAAA    968

BSNT_01954___    966 TGATATTGCCCGGGCAAAATCCATTTATCATAAATGGATTGGGTAA   1011
                     ||||||.|||...||||.|.|||||||||||.||||||||||.|||
BPUM_1099___t    969 TGATATCGCCAAAGCAAGAACCATTTATCATCAATGGATTGGCTAA   1014


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