Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01952 and BPUM_1098

See Amino acid alignment / Visit BSNT_01952 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_01952___thiG.1.24716.seq
#    -bsequence dna-align/BPUM_1098___thiG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01952___thiG-BPUM_1098___thiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01952___thiG-BPUM_1098___thiG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01952___thiG
# 2: BPUM_1098___thiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity:     586/778 (75.3%)
# Similarity:   586/778 (75.3%)
# Gaps:          23/778 ( 3.0%)
# Score: 2128.5
# 
#
#=======================================

BSNT_01952___      1 ATGTTAACA-ATTGGCGGAAAACCATTTCA-ATCAAGATTGCTGCTGGGC     48
                     |||.| ||| ||||||||||||.|| |||| |||.|||||..|.||.||.
BPUM_1098___t      1 ATGCT-ACACATTGGCGGAAAAACA-TTCACATCTAGATTATTACTTGGT     48

BSNT_01952___     49 ACGGGGAAATACCCATCGTTTGACATTCAAAAGGAAGCAGT-AGCTGTTT     97
                     ||.||||||||.|||||.|||||..|||||||.|||||.|| |.| ||.|
BPUM_1098___t     49 ACAGGGAAATATCCATCATTTGAAGTTCAAAAAGAAGCCGTGAAC-GTAT     97

BSNT_01952___     98 CCGAGTCTGATATTTTAACCTTTGCTGTGCGGAGAATGAACATCTTTGAT    147
                     |.||..|.||.||.|||||||||||||||.|.|||||||||||.||.||.
BPUM_1098___t     98 CAGAAGCAGAAATATTAACCTTTGCTGTGAGAAGAATGAACATTTTCGAA    147

BSNT_01952___    148 GCATCTCAGCCGAATTTTCTGGAACAGCTTGATTTATCCAAATATACGCT    197
                     |||||||||||.||||||.||||.||||||||||||||.|||||||||||
BPUM_1098___t    148 GCATCTCAGCCCAATTTTTTGGAGCAGCTTGATTTATCTAAATATACGCT    197

BSNT_01952___    198 TTTGCCGAATACAGCGGGCGCCAGCACTGCTGAAGAAGCGGTTCGGATTG    247
                     ..|.|||||||||||.||.||.||.||.||.||.||.||.|||||.||||
BPUM_1098___t    198 GCTTCCGAATACAGCTGGTGCAAGTACAGCGGATGAGGCAGTTCGTATTG    247

BSNT_01952___    248 CAAGGCTGGCAAAAGCGTCAGGCCTTTGTGACATGATTAAAGTTGAAGTC    297
                     |..|..|.|||||.||.||.||.||.|||||||||||.||.||.||||||
BPUM_1098___t    248 CTCGTTTAGCAAAGGCTTCTGGACTGTGTGACATGATCAAGGTAGAAGTC    297

BSNT_01952___    298 ATCGGATGC---AGCCGTTCCTTGCTGCCTGACCCTGTTGAGACATTAAA    344
                     ||.||.|||   ||  ||..||| |||||.||.||.||.||.||.|||||
BPUM_1098___t    298 ATTGGCTGCTCAAG--GTCTCTT-CTGCCAGATCCAGTCGAAACGTTAAA    344

BSNT_01952___    345 AGCGTCTGAACAGCTTCTTGAAGAAGGCTTTATTGTGCTCCCGTACACGT    394
                     |||.||||||..|.|.||.||||||||.|||||||||||.||.||.||.|
BPUM_1098___t    345 AGCATCTGAAATGTTACTCGAAGAAGGATTTATTGTGCTACCTTATACAT    394

BSNT_01952___    395 CGGATGACGTTGTGCTGGCGAGAAAGCTGGAAGAGCTCGGCGTTCATGCC    444
                     |||||||.||.||.|||||.|||||..|.||||||||.||.||.|||||.
BPUM_1098___t    395 CGGATGATGTGGTACTGGCAAGAAAATTAGAAGAGCTTGGTGTCCATGCT    444

BSNT_01952___    445 ATCATGCCGGGTGCATCTCCGATTGGATCAGGACAAGGAATCTTAAATCC    494
                     ||.|||||.|||||.||.||||||||.|||||.|||||..|..||||.||
BPUM_1098___t    445 ATTATGCCAGGTGCTTCACCGATTGGTTCAGGGCAAGGCTTACTAAACCC    494

BSNT_01952___    495 TTTGAATCTGTCGTTTATTATTGAACAGGCGAAAGTGCCGGTCATCGTGG    544
                     |.|||||||.||.||.|||||.||.|||||||||||.|||||.||..|.|
BPUM_1098___t    495 TCTGAATCTCTCATTCATTATCGAGCAGGCGAAAGTACCGGTGATTATTG    544

BSNT_01952___    545 ATGCTGGAATCGGCTCGCCTAAAGATGCGGCATACGCCATGGAGCTTGGA    594
                     |||||||..|.|||||.||.||.||||||||.||.||.||||||||.||.
BPUM_1098___t    545 ATGCTGGTGTAGGCTCTCCAAAGGATGCGGCTTATGCGATGGAGCTAGGG    594

BSNT_01952___    595 GCGGATGGCGTACTGCTCAATACGGCTGTATCGGGCGCTGACGATCCTGT    644
                     ||.||.|..|||.|..|.||.||.|||||.||.||.||..|.||.|||||
BPUM_1098___t    595 GCTGACGCTGTATTATTGAACACAGCTGTCTCAGGTGCAAAAGACCCTGT    644

BSNT_01952___    645 GAAAATGGCTCGTGCCATGAAGCTCGCGGTGGAAGCAGGACGCCT----T    690
                     |||.||||||...||||||||.||.|||.|.|||.|||||.|.||    |
BPUM_1098___t    645 GAAGATGGCTAAAGCCATGAAACTGGCGATTGAATCAGGAAGGCTAGGCT    694

BSNT_01952___    691 TCTTATGAGGCGGGCCGAATCCCGCTTAAGCAATACGGAACGGCAAGCAG    740
                     ||    |||||.|||||.||.||..|.||..|.||||||||.||||||||
BPUM_1098___t    695 TC----GAGGCAGGCCGGATTCCATTGAAAAACTACGGAACAGCAAGCAG    740

BSNT_01952___    741 TCCGGTAGAAGGTCTTCCTG---TATGA    765
                     ||||...|||||..|.||.|   |.|||
BPUM_1098___t    741 TCCGCAGGAAGGAATGCCGGCATTTTGA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01952 and BPUM_1098

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
