Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01950 and BPUM_1096
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_01950___goxB.1.24716.seq
# -bsequence dna-align/BPUM_1096___goxB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01950___goxB-BPUM_1096___goxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01950___goxB-BPUM_1096___goxB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01950___goxB
# 2: BPUM_1096___goxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1239
# Identity: 737/1239 (59.5%)
# Similarity: 737/1239 (59.5%)
# Gaps: 255/1239 (20.6%)
# Score: 1942.5
#
#
#=======================================
BSNT_01950___ 1 ATGAAAAGGCATTATGAAGCAGTGG---TGATTGGAGGCGGAATGATCGG 47
|||||.|.||||||||| .|||| |.|||||.||.|||||.||.||
BPUM_1096___g 1 ATGAAGAAGCATTATGA---TGTGGCAATCATTGGTGGTGGAATCATAGG 47
BSNT_01950___ 48 ---TTCCGCGATTGCTTATTATTTGGCAAAGGAAAACA--AAAGCA--CC 90
.||| |||||.|||.|..|.||| |||.|| |||||| .|
BPUM_1096___g 48 GATGTCC---ATTGCCTATCACCTTGCA----AAAGCAGGAAAGCAGGTC 90
BSNT_01950___ 91 GCATTGTTTGAAAGCG---GAACAATGGGCGGCAGAACGACAAGTGCCGC 137
|..||.|||| ||||| |||..| |||..||| ||||||||||||.||
BPUM_1096___g 91 GTCTTATTTG-AAGCGAGTGAAGTA-GGGAAGCA-AACGACAAGTGCGGC 137
BSNT_01950___ 138 TGCCGGAATGCTGGGCGCCCATGCCGAATGCGAAGAACGTGACG---CGT 184
|||.||||||||.||.||.|||||.|||.|.||.|....|||.| |.|
BPUM_1096___g 138 TGCTGGAATGCTTGGTGCACATGCTGAAGGAGAGGGTTATGAGGATACTT 187
BSNT_01950___ 185 TTTTTGATTTCGCCA-TGCA---CAGTCAGCGTCTGTACAAAGGTCTTGG 230
|||||.|..|.|.|| .||| ||.||| .||||| |
BPUM_1096___g 188 TTTTTCAAGTAGGCAGAGCAAGCCAATCA----TTGTAC----------G 223
BSNT_01950___ 231 AGAAGAGCTTTA-------------TGCAT-TATCCGGTGTGGATATCAG 266
||||| ||| .|||| .|||.||..|.|||||..|
BPUM_1096___g 224 AGAAG----TTAAAAGTCGATCTACGGCATGAATCTGGCATTGATATTCG 269
BSNT_01950___ 267 GCAGCATAA--CGGCGGTATGTTTAAGCTTGCATTTTCTGAAGAAGA--- 311
|.|||.| .||||||||..|.||..|.||.|||.|.|||||.||
BPUM_1096___g 270 --AACATCAGCGGGCGGTATCATGAAAGTAGCTTTTACAGAAGAGGAGAA 317
BSNT_01950___ 312 --------TGTGC----TGCAGC-------------TGAGACAGATGGAC 336
|.||| |||||| |||| ||||
BPUM_1096___g 318 ACAAGCACTTTGCCGGATGCAGCATTTGTCTACATTTGAG-----TGGA- 361
BSNT_01950___ 337 GATTTGGACTCTGTCAGCTGGTATTCAAAAGAAGAGGTGTTAGAAAAAGA 386
|.|||.|.|.|||| ||| |||||..
BPUM_1096___g 362 ----TAGACGCAGGCAGC--GTA--------------------AAAAAAT 385
BSNT_01950___ 387 GCCGTATGCGTCTGGTG-------ACATCTTTGGTGCATCTTTTATTCAG 429
|| ||||.||...|| |||||||.||.|||..|||.|||.|.
BPUM_1096___g 386 GC---ATGCCTCAAATGGCAGAGAACATCTTAGGAGCAGGTTTGATTAAA 432
BSNT_01950___ 430 GATGATGTGCATGTGGAGCCTTATTTTGTTTGCAAGGCATATGTGAAAGC 479
||.|||||.|||||.||.||||||...||||||..|||||.|..||||||
BPUM_1096___g 433 GAAGATGTTCATGTTGAACCTTATGCCGTTTGCCGGGCATTTTGGAAAGC 482
BSNT_01950___ 480 AGCAAAAATGCTTGGGGCGGAGATTTTTGAGCATACGCCTGTCCTGCATG 529
|||....|||...||.||.||..|....|||..|||.|| |.||
BPUM_1096___g 483 AGCGGTCATGTACGGTGCAGAAGTGAAAGAGTGTACACC-------CGTG 525
BSNT_01950___ 530 -TCGAACGTGA--CGG-----TGAAGCCCTGTCCATCAAGACCCCTAGCG 571
|.||| |||| ||| .||||| || |||||
BPUM_1096___g 526 ATTGAA-GTGAAGCGGGAGAAAGAAGC---GT-------------TAGCG 558
BSNT_01950___ 572 --GAGACGTA---TGGGCTAAT---CATGT-------TGTC-GTTGCCAG 605
.|||...| ||||...|| ||||| ||.| |||||.||
BPUM_1096___g 559 ATTAGAACAACAGTGGGAACATTCACATGTGATGACCTGACTGTTGCGAG 608
BSNT_01950___ 606 CGGGGTGTGGAGCGGAATGTTTTTTAAACAGCTTGGA----CTGAACAAT 651
.||.||||||...||....||||||.||.|||||||| ||.|
BPUM_1096___g 609 TGGTGTGTGGTCTGGCCGTTTTTTTGAAGAGCTTGGATTATCTCA----- 653
BSNT_01950___ 652 GCTTTTCTC-----CCTGTAAAAGGGGAGTGCCTGTCCGTTTGGAATGAT 696
||||| ||.||||||||.||.||..||||.||.||||||.|.
BPUM_1096___g 654 ----TTCTCTTTATCCAGTAAAAGGAGAATGTGTGTCTGTATGGAATCAG 699
BSNT_01950___ 697 GATATCCCGCTGACAAAAACGC--TTTACCATGATCACTGCTATATCGT- 743
| .|||.||...|.||.||.| |||||||||||||.||.||.|||||
BPUM_1096___g 700 G--GTCCAGCACTCGAACACACCATTTACCATGATCATTGTTACATCGTT 747
BSNT_01950___ 744 -ACCGAGAAAAAGCGGCAAACTGGTTGTCGGCGCGACAATGAAGCTGGGA 792
|.|||| |.||||||||||||||.||.|||||.||.||||||| .|
BPUM_1096___g 748 CAACGAG--ATAGCGGCAAACTGGTCGTTGGCGCAACGATGAAGC---CA 792
BSNT_01950___ 793 GACTGGAGTG--AAAC---ACCGGATCTTGGCGG-ATTGGAATCGGTTAT 836
.|| ||||| |||| .|||...|||||.|| ||| |||.|.||.||
BPUM_1096___g 793 AAC--GAGTGGCAAACTGTTCCGACGCTTGGGGGCATT-GAAGCTGTCAT 839
BSNT_01950___ 837 GAAAAAAG-----CAAAAACGATGCTGCCGGCTATACAGAATATGAAGGT 881
..|||||| || |.||.||||..|.||..||.|.|||..|.|
BPUM_1096___g 840 TCAAAAAGCTTCTCA-----GCTGATGCCCTCAATCAAGGAGATGCCGAT 884
BSNT_01950___ 882 GGATCGTTTTTGGGCGGGACTCCGGCCGGGAACAAAGGATGGAAAACCGT 931
.||||..|..|||||.||.||.||.||||..|||||.||..|..|.||.|
BPUM_1096___g 885 TGATCAGTGCTGGGCTGGCCTTCGTCCGGCGACAAATGACCGGCATCCCT 934
BSNT_01950___ 932 ACATCGGCAGACATCCTGAGGA-CAGCCGTATTTTATTTGCGGCGGGCCA 980
||||.||.||||||||.||.|| ||| ||.||..|.|||||.||.||.||
BPUM_1096___g 935 ACATTGGTAGACATCCAGAAGATCAG-CGCATCCTTTTTGCCGCAGGGCA 983
BSNT_01950___ 981 TTTCAGAAATGGGATCCTGCTTGCTCCCGCA--ACAGGCGCTTTGATCA- 1027
||.|||||||||.||..|.||||| |||| | ||.||.| .|||||
BPUM_1096___g 984 TTACAGAAATGGTATTTTACTTGC-CCCG-ATTACTGGAG---AGATCAT 1028
BSNT_01950___ 1028 --GTGATCTCATCATGAATAAAGAGGTCAACCAAGACTGGCTGCACGCAT 1075
|.||.||.||.||...||||..||||||..|.||.|||||.|||||||
BPUM_1096___g 1029 TCGCGACCTGATAATAGGTAAACCGGTCAAAAAGGAATGGCTTCACGCAT 1078
BSNT_01950___ 1076 TCCGAATTGATCGCAAGGAGGCGGTTCAGA----TATGA 1110
|.||.||||..||.||||||||..| | |||||
BPUM_1096___g 1079 TTCGTATTGGCCGAAAGGAGGCACT----ATTTGTATGA 1113
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