Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01943 and BPUM_1091
See
Amino acid alignment /
Visit
BSNT_01943 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01943___yjbO.1.24716.seq
# -bsequence dna-align/BPUM_1091___rluA2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01943___yjbO-BPUM_1091___rluA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01943___yjbO-BPUM_1091___rluA2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01943___yjbO
# 2: BPUM_1091___rluA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 603/994 (60.7%)
# Similarity: 603/994 (60.7%)
# Gaps: 221/994 (22.2%)
# Score: 1704.0
#
#
#=======================================
BSNT_01943___ 1 GTGGAGCATTTTTTTAT--CAG--AAAGAACATTACTTCCGCTGAGGACG 46
|| ||| |||||| ||.|
BPUM_1091___r 1 ---------------ATGACAGCCAAAGAA----------------GAGG 19
BSNT_01943___ 47 GGATGACTGTAAAAGAATATGCCGGT-----GAACTGGGAATTTCGAAAC 91
||.||..|.||||.||.||| | ||.||.||.|||||||||.
BPUM_1091___r 20 GGCTGCTTTTAAAGGATTAT-----TTAATAGATCTTGGCATTTCGAAAA 64
BSNT_01943___ 92 GTCTGCTGACCGATATTAAGTTTGGCGGGGGAGACCTGCAGATTAACGGT 141
|..|||||||.||||||||.||||..||.||.||.||.|..|||||.||.
BPUM_1091___r 65 GAATGCTGACAGATATTAAATTTGATGGCGGTGATCTCCTCATTAATGGA 114
BSNT_01943___ 142 GAGCATGTGACGGTCAAATACGTTTTGAAAG-------AGGGAGA----- 179
|||||||||||.||.|.|||| ||| |.|||||
BPUM_1091___r 115 GAGCATGTGACTGTGAGATAC-------AAGCTGCATAATGGAGACAGGC 157
BSNT_01943___ 180 ----TCTTCTTATCGTGAAGTTTCCTGAGGAACAGGTGAGCGAGACGCTG 225
|.|| ||| ||.||..|||||.|.|||||.||...|||
BPUM_1091___r 158 TCACTATT-TTA--------TTCCCAAAGGAAAAAGTGAGTGAAGGGCT- 197
BSNT_01943___ 226 CTGGCAGAGCCT------ATTCCGCTCGATATCCTTTAT--GAGGATGAA 267
|.||||| ||||||||.||||| ||||| ||||||||.
BPUM_1091___r 198 -----AAAGCCTGCTCCGATTCCGCTTGATAT--TTTATTCGAGGATGAG 240
BSNT_01943___ 268 CATGTGCTTGT----GATAAACAAGCAGCCGTATGTGTCATCAATCCCTT 313
|||||.||||| .|||| ||| |||.|||.|..|.||.||.||||
BPUM_1091___r 241 CATGTCCTTGTACTGAATAA--AAG--GCCATATATCCCGTCCATTCCTT 286
BSNT_01943___ 314 CGAGAGAGCACCC----CTCCGGCAGCATTGCCAATGGAATTATTG-ATC 358
|..|.|||||||| | .|||.|||||.||||| .||.||| |.|
BPUM_1091___r 287 CCCGTGAGCACCCAGAGC----ACAGTATTGCAAATGG-GTTGTTGCACC 331
BSNT_01943___ 359 ATTAT-CAAAAAAACGGAGTGAG---GGC-GACAGTACATCTTGTCACCC 403
||||| ||.| |.|||..| ||| ||||||.|||.|.||.|..|
BPUM_1091___r 332 ATTATGCAGA-----GCAGTCTGTTCGGCTGACAGTTCATTTGGTGAATC 376
BSNT_01943___ 404 GGCTAGACCGGGATACATCAGGTGTCATGCTTGTTGCCAAGCATCGATTT 453
|.||.|||||.||||||||.||.|||||||||||.|||||||||||.|||
BPUM_1091___r 377 GTCTTGACCGTGATACATCTGGCGTCATGCTTGTGGCCAAGCATCGCTTT 426
BSNT_01943___ 454 GCCCACTCCATTTTATCGTCTGCGCAAAAAAACGGCCTTGTGAAACGCCG 503
||||||..|.|||||||....|||||.||||..||....||.|||||...
BPUM_1091___r 427 GCCCACAGCCTTTTATCAAAAGCGCAGAAAAGTGGAGCGGTTAAACGAAC 476
BSNT_01943___ 504 GTATGCGGCAGTG-GTT--CACGGGCGGATGGCA----CAGATGGA---- 542
.|| |||.| ||| ||| |||||| ||.| ||
BPUM_1091___r 477 ATA-----CAGAGCGTTTACAC------ATGGCATGATCAAA--GAAAAG 513
BSNT_01943___ 543 ---GGGAACAGTCGATGCTCCGATTGGCAGACATCCTGACAGTATTATT- 588
||.|.||.|||| ||....||||.|.||.|....||.|||||.|||
BPUM_1091___r 514 CATGGCACCATTCGA-GCAAAAATTGCCCGAAAAGGAGATAGTATCATTG 562
BSNT_01943___ 589 ---GAACGGACGGTAACACCGGACGGCCAGAAGGCTGTTACTCATTTT-- 633
|||.||.||.|.|.||.||| |||.|.|||||.||.||||||
BPUM_1091___r 563 AGCGAATGGTCGATGATACTGGA----CAGGAAGCTGTGACGCATTTTAC 608
BSNT_01943___ 634 --TACG-TCACATGTGCA-AATGA--TG-ACATGACCTC-GGTG----GC 671
|||| .|| |||.| |.||| || ||||| || |.|| ||
BPUM_1091___r 609 AGTACGAGCA---GTGGACACTGAGTTGAACATG---TCAGATGTAGCGC 652
BSNT_01943___ 672 ATTGCAGCTTGAGACTGGACGAACCCATCAAATTCGTGTTCATATG-AGC 720
|.||| |||||.||.||..||||||||||||||||||||||.||| ||
BPUM_1091___r 653 -TAGCA-CTTGAAACGGGGAGAACCCATCAAATTCGTGTTCACATGCAG- 699
BSNT_01943___ 721 TATCTCGGGCACCCGTTGTGCGGCGATACACTGTACGGCGGAACGA--GA 768
|||||.||..|||||.|...|||.|||||..|.||.|||||||||| ||
BPUM_1091___r 700 TATCTTGGTTACCCGCTCATCGGAGATACGTTATATGGCGGAACGAATGA 749
BSNT_01943___ 769 CAGGA--AATTGGCCGGCAGGCTCTGCACAGCGAGCATCTT-TCATTTAT 815
..||| || |||||||||.|||||.||.|||..|||| || |||..
BPUM_1091___r 750 GCGGATGAA----CCGGCAGGCACTGCATAGTGAGACTCTTGTC-TTTCC 794
BSNT_01943___ 816 CCATCCGCTGACACAGAAGAACATGACGTT-TCATGCTCCACTGCCTCAG 864
.||||||.||||...|.||.|.|||||.|| || .|||||.||.|||.|.
BPUM_1091___r 795 TCATCCGATGACTGGGGAGGAAATGACATTCTC-GGCTCCGCTTCCTGAA 843
BSNT_01943___ 865 GACATGAGAAAACTGATAAAAGGAGAGAATCATTGA-------- 900
||||||| ||||||||.
BPUM_1091___r 844 GACATGA--------------------AATCATTGCTGCTTTAA 867
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.