Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01942 and BPUM_1090

See Amino acid alignment / Visit BSNT_01942 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_01942___ppnK.1.24716.seq
#    -bsequence dna-align/BPUM_1090___ppnK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01942___ppnK-BPUM_1090___ppnK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01942___ppnK-BPUM_1090___ppnK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01942___ppnK
# 2: BPUM_1090___ppnK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 810
# Identity:     610/810 (75.3%)
# Similarity:   610/810 (75.3%)
# Gaps:          18/810 ( 2.2%)
# Score: 2208.5
# 
#
#=======================================

BSNT_01942___      1 ATGAAATTTGCCGTATCATCAAAAGGAGA--TCAAGTTTCTGATACGCTG     48
                     |||||||||||.||.||.|||||||| ||  ||.| |.|||||.||.||.
BPUM_1090___p      1 ATGAAATTTGCAGTTTCTTCAAAAGG-GAATTCTA-TATCTGACACACTC     48

BSNT_01942___     49 AAAAGCAAAATACAGGCGTATTTATTGGATTTTGATATGGAACTGGATGA     98
                     ||||..|||||.|||.|.||.|||||||||||||..||||||||..||||
BPUM_1090___p     49 AAAAATAAAATTCAGACCTACTTATTGGATTTTGGGATGGAACTCAATGA     98

BSNT_01942___     99 AAATGAACCGGAAATCGTTATTTCAGTCGGAGGCGACGGAACGCTT--TT    146
                     |.|.|||||.||..|.||.|||.|.||.||.||.|||||.|| |||  ||
BPUM_1090___p     99 AGAGGAACCAGATCTTGTCATTACGGTTGGTGGAGACGGCAC-CTTACTT    147

BSNT_01942___    147 GTATGCTTTTCACAGATACAGCGACCGCTTGGACAAAACAGCATTTGTCG    196
                      |||||.||||||.|.||.||.|||||..||.|..|||||||.|||||.|
BPUM_1090___p    148 -TATGCATTTCACCGTTATAGTGACCGTCTGAATGAAACAGCTTTTGTGG    196

BSNT_01942___    197 GCGTTCACACAGGTCATCTGGGTTTTTATGCCGACTGGGTTCCTCATGAA    246
                     |.|||||.|||||||||||.||||||||||||||||||||.||...||||
BPUM_1090___p    197 GTGTTCATACAGGTCATCTTGGTTTTTATGCCGACTGGGTGCCAAGTGAA    246

BSNT_01942___    247 ATTGAAAAACTTGTTCTT-GCCATCGCGAAAACGCCGTATCATACAGTCG    295
                     |||||||||||.| |||| ||.||.|||||||||||.|||||.|..||.|
BPUM_1090___p    247 ATTGAAAAACTCG-TCTTAGCTATTGCGAAAACGCCTTATCACATTGTGG    295

BSNT_01942___    296 AATATCCGCTTCTCGAAGTCATTGTGACCTATCACGAAAACGAGCGG---    342
                     ||||||||.|..|.|||||||||||.|..||..|||   ||| ||||   
BPUM_1090___p    296 AATATCCGATCTTAGAAGTCATTGTCAGATACAACG---ACG-GCGGTAG    341

BSNT_01942___    343 -GAAGAAAGATACTTAGCTTTGAATGAATGTACGATTAAAAGCATCGAAG    391
                      |||||.|.|||.||.|||.|||||||||||||||||||.||.||.||||
BPUM_1090___p    342 AGAAGAGAAATATTTGGCTATGAATGAATGTACGATTAAGAGTATGGAAG    391

BSNT_01942___    392 GAAGCCTTGTTGCTGATGTGGAAATCAAAGGGCAGCTCTTTGAAACCTTC    441
                     |.|..||.||.||.|||||.|||||.|..||.|||||.||||||||.|||
BPUM_1090___p    392 GGACACTAGTGGCAGATGTTGAAATTAGGGGTCAGCTGTTTGAAACATTC    441

BSNT_01942___    442 CGGGGCGACGGCCTCTGCCTGTCAACTCCATCAGGCAGCACAGCCTACAA    491
                     .|.||.|||||.||.||.|||||.||.||.||.|||||.|||||.||.||
BPUM_1090___p    442 AGAGGTGACGGTCTTTGTCTGTCTACACCGTCTGGCAGTACAGCTTATAA    491

BSNT_01942___    492 TAAGGCGCTGGGCGGAGCGATTATCCATCCGTCTATCAGGGCGATCCAGC    541
                     |||.||.||.||.||.||.|||||.||.||.||.||.||.||.||.||||
BPUM_1090___p    492 TAAAGCACTTGGGGGCGCTATTATTCACCCTTCCATTAGAGCCATTCAGC    541

BSNT_01942___    542 TTGCGGAAATGGCTTCAATTAATAACCGCGTGTTCCGTACGGTCGGGTCA    591
                     |.||.|||||||||||.||.||.|||.|.|||||.||.||||||||.||.
BPUM_1090___p    542 TGGCAGAAATGGCTTCCATCAACAACAGAGTGTTTCGAACGGTCGGTTCG    591

BSNT_01942___    592 CCTCTGCTTCTCCCATCCCATCATGATTGCATGATTAAGCCGAGAAACGA    641
                     ||.|||.||.|.||...|||||||..|||..|.|||||.|||||.||.||
BPUM_1090___p    592 CCGCTGATTTTACCGGACCATCATACTTGTGTCATTAAACCGAGGAATGA    641

BSNT_01942___    642 AGTTGACTTTCAAGTGACGATTGACCATTTAACCCTTCTCCATAAGGATG    691
                     .||.||.|||||.||.||.|||||.|||||.||.||.||.||||||||.|
BPUM_1090___p    642 TGTCGATTTTCAGGTAACCATTGATCATTTGACGCTGCTTCATAAGGACG    691

BSNT_01942___    692 TAAAGTCGATCCGCTGCCAAGTTGCATCCGAAAAAGTGCGGTTTGCGAGA    741
                     |.||.||.||.|..||||..||.|||..|||.||.||.||.|||||..||
BPUM_1090___p    692 TCAAATCCATTCAATGCCGGGTAGCAGACGAGAATGTCCGTTTTGCCCGA    741

BSNT_01942___    742 TTCCGTCCGTTTCCATTTTGGAAAAGAGTCCAGGATTCGTTTATTGGAAA    791
                     ||..|.||.|||||.|||||||||||.||.||.|||||.|||||.|||||
BPUM_1090___p    742 TTTAGACCATTTCCGTTTTGGAAAAGGGTGCAAGATTCCTTTATCGGAAA    791

BSNT_01942___    792 AGGTGAATAG    801
                     |||.|||||.
BPUM_1090___p    792 AGGAGAATAA    801


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