Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01941 and BPUM_1089
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01941___yjbM.1.24716.seq
# -bsequence dna-align/BPUM_1089___yjbM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01941___yjbM-BPUM_1089___yjbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01941___yjbM-BPUM_1089___yjbM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01941___yjbM
# 2: BPUM_1089___yjbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 651
# Identity: 476/651 (73.1%)
# Similarity: 476/651 (73.1%)
# Gaps: 33/651 ( 5.1%)
# Score: 1735.5
#
#
#=======================================
BSNT_01941___ 1 ATGATGGATGACAAACAATGGGAGCGTTTTTTAGTGCCGTACCGCCAGGC 50
|||||..|.|||||||||||.|..||..|.|..|||||....||.||
BPUM_1089___y 1 ---ATGGACAAAAAACAATGGGATCAATTCCTCGCACCGTATAAACAAGC 47
BSNT_01941___ 51 TGTCGAAGAGTTGAAAGTGAAGCTCAAGGGGATCCGCACACTATATGAAT 100
.||||||||.||.||||||||.||.||.||.||.||.|..||.|||||||
BPUM_1089___y 48 AGTCGAAGAATTAAAAGTGAAACTAAAAGGCATTCGAAAGCTGTATGAAT 97
BSNT_01941___ 101 ACGAGGACGACCATTCACCGATCGAATTTGTGACCGGACGCGTCAAGCCT 150
.||||||.|||||||||||..|.||||||||.||.||.||.||.||.||.
BPUM_1089___y 98 TCGAGGATGACCATTCACCAGTAGAATTTGTCACAGGCCGAGTGAAACCC 147
BSNT_01941___ 151 GTGGCGAGCATTCTTGAAAAAGCGAGACGGAAAAGCATACCGCTGCATGA 200
||.||.|||||..|.|||||.||.|..||.|||...||.||..|||||||
BPUM_1089___y 148 GTTGCCAGCATATTAGAAAAGGCAAAGCGTAAAGATATCCCAATGCATGA 197
BSNT_01941___ 201 AATTGAAACCATGCAGGACATTGCTGGCCTTAGAATCATGTGCCAATTTG 250
|||||||||.||||||||.||||||||.|||.|.||.||||||||.||||
BPUM_1089___y 198 AATTGAAACGATGCAGGATATTGCTGGGCTTCGCATTATGTGCCAGTTTG 247
BSNT_01941___ 251 TCGATGACATCCAAATCGTAAAAGAGATGCTTTTTGCCA-----GAAAAG 295
|.||.|||||.|||.||||.|||.|.||||| ||| ||||||
BPUM_1089___y 248 TAGAAGACATACAAGTCGTGAAAAAAATGCT-----CCAGTCACGAAAAG 292
BSNT_01941___ 296 ATTTCACCGTTGTGGATCAGAGGGATTATATTGCGGAACATAAAGAGAGC 345
|.|||...|||||.|||.|..|.||.||||||||.||.||||||||.|||
BPUM_1089___y 293 ACTTCGTGGTTGTTGATAAACGCGACTATATTGCAGAGCATAAAGAAAGC 342
BSNT_01941___ 346 GGATACCGGTCATACCATCTTGTTGTGCTGTACCCTTTGCAGACGGTATC 395
||||||||.||.|||||.|||||||||.|.||.||..||||.||| |||
BPUM_1089___y 343 GGATACCGTTCGTACCACCTTGTTGTGTTATATCCGCTGCAAACG--ATC 390
BSNT_01941___ 396 --CGGAGAAAAGCATGTTCTCGTAGAAATACAGATCCGTACACTGGCGAT 443
||||||.|||||..|.||.||.|||||.||.||.||||||||.|||||
BPUM_1089___y 391 AACGGAGAGAAGCAGCTCCTTGTCGAAATCCAAATTCGTACACTTGCGAT 440
BSNT_01941___ 444 GAATTTTTGGGCGACCATTGAACATTCATTGAATTATAAATACAGCGGAA 493
|||||||||||||||.|||||.||.||..|||||||||||||.|||||.|
BPUM_1089___y 441 GAATTTTTGGGCGACGATTGAGCACTCTCTGAATTATAAATATAGCGGGA 490
BSNT_01941___ 494 ACATTCCTGAAAAAGTAAAACTAAGGCTTCAGCGCGCTTCTGAAGCGGCT 543
|.||.||.||.|||||.||.||..|.|||||..|.||||||||.||.||.
BPUM_1089___y 491 ATATCCCGGAGAAAGTCAAGCTGCGCCTTCAAAGAGCTTCTGAGGCAGCG 540
BSNT_01941___ 544 TCCCGGCTTGATGAAGAGATGTCGGAGATCAGGGGTGAAGTACAGGAAGC 593
||||..||||||||.||||||||.||.||.||.||.|||.|.||.|||||
BPUM_1089___y 541 TCCCTTCTTGATGATGAGATGTCTGAAATTAGAGGGGAAATTCAAGAAGC 590
BSNT_01941___ 594 TCAAGCTGCCTTTTC----AAGAAAGAAAAAAGGAAGC-GAGCAACAATA 638
.||||..||.||||| || |||||||||.|..||| ||
BPUM_1089___y 591 ACAAGTAGCATTTTCCCGGAA-AAAGAAAAACGATAGCTGA--------- 630
BSNT_01941___ 639 G 639
BPUM_1089___y 630 - 630
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