Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01940 and BPUM_1088
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01940___yjbL.1.24716.seq
# -bsequence dna-align/BPUM_1088___yjbL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01940___yjbL-BPUM_1088___yjbL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01940___yjbL-BPUM_1088___yjbL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01940___yjbL
# 2: BPUM_1088___yjbL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 413
# Identity: 254/413 (61.5%)
# Similarity: 254/413 (61.5%)
# Gaps: 88/413 (21.3%)
# Score: 679.0
#
#
#=======================================
BSNT_01940___ 1 ---ATGCAAAACAGAATCGAAAT-TTTGAATGCAACATTATCGGATGATC 46
|||||||||.||||.||||| ...||| |||||.|||...||.|| |
BPUM_1088___y 1 ATGATGCAAAACCGAATTGAAATCGCAGAA-GCAACTTTAAAAGAAGA-C 48
BSNT_01940___ 47 AGCTTCGCCTTACTT----------GTCAGACAGAAGGAAA-CGAAGCGG 85
| |.||.|.|| |||||| || ||.||| |.||
BPUM_1088___y 49 A-----GGCTGATTTTGACGACCAAGTCAGA-AG-AGCAAATCCAA---- 87
BSNT_01940___ 86 AACGC--AAGCCGTCAGGTCAAATGCTTGTTGATTCTGACCACTTTGCTT 133
||.|| ||| |.|||||.||||||||||||||||||||.||||||||.|
BPUM_1088___y 88 AAAGCAAAAG-CATCAGGACAAATGCTTGTTGATTCTGATCACTTTGCGT 136
BSNT_01940___ 134 TTGTATACATACTTG--AATTAGCTGATTCTTTTGAATATGTCATTATAA 181
|.||.|||||||||| |||.|| ||.||.|||..||||.|.||..||.
BPUM_1088___y 137 TCGTTTACATACTTGAAAATGAG--GAGTCCTTTTCATATCTTATCTTAG 184
BSNT_01940___ 182 AGGAACATGTATGG----CCGGAACTGAAGCAGGCCCATG-CACAAAAAA 226
.||||.||..|||| |...||..|||||| ||| |||...|.|
BPUM_1088___y 185 GGGAAGATACATGGGCTCCATTAAAAGAAGCA-----ATGACACTTGACA 229
BSNT_01940___ 227 TACCGGT-TGTTTTAGAGGCA--GGA--GACCAAACAATT-----GAACT 266
|.||.|| |.||| |||| ||| ||| ||| |||||
BPUM_1088___y 230 TCCCTGTCTATTT----GGCAGCGGAAGGAC------ATTCGTTAGAACT 269
BSNT_01940___ 267 GGCAGGC--CTGCATGAGGAGCTGGAATATCTTTTAGAAAATATAAAAGA 314
||..| ||.|||.|.||..|..|.|||.|..|.||.|||||.|||||
BPUM_1088___y 270 --CATTCAGCTTCATCAAGAATTACATTATTTAATCGACAATATTAAAGA 317
BSNT_01940___ 315 TAATGCAAACTATGGAGAAGAAATGGAAGAAAAAGTGAA----ACACGTG 360
.|||||.||.||.|| |||.||||||||.|||||||| |||
BPUM_1088___y 318 CAATGCCAATTACGG---AGATATGGAAGAGAAAGTGAAGAGCACA---- 360
BSNT_01940___ 361 TTT----TTATAG 369
|| |.|
BPUM_1088___y 361 -TTCCTCTGA--- 369
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