Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01938 and BPUM_1087
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01938___yjbK.1.24716.seq
# -bsequence dna-align/BPUM_1087___yjbK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01938___yjbK-BPUM_1087___yjbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01938___yjbK-BPUM_1087___yjbK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01938___yjbK
# 2: BPUM_1087___yjbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity: 377/675 (55.9%)
# Similarity: 377/675 (55.9%)
# Gaps: 198/675 (29.3%)
# Score: 968.0
#
#
#=======================================
BSNT_01938___ 1 ATGAGC-CAAGAAATTGAAATCGAATTTAAAAACA--TGCTGACCAAACA 47
||| || ||.|||||||||||.|||.| |||.|| |..|.|..|||.|
BPUM_1087___y 1 ATG-GCACAGGAAATTGAAATAGAACT--AAAGCAATTATTAATGAAAGA 47
BSNT_01938___ 48 AGAATTCAAAAACATAGCAGCGGCACTCCAGCTGACAGAAAAAGATTTTA 97
||||||..|| |||.||| ||.||.|||||
BPUM_1087___y 48 AGAATTTGAA------------------CAGTTGA---AACAACATTTT- 75
BSNT_01938___ 98 CA-------------GAT---------CAAAAGAATCATTATTTTGATAC 125
|| ||| ||||..||..||||.||||||||
BPUM_1087___y 76 CAATTGAAGGATTCTGATTTTCACACGCAAACCAACTATTACTTTGATAC 125
BSNT_01938___ 126 AGACAGCTTCGCGCTGAAACAAAA--ACAA---GCTGCGCTTCGTATCCG 170
|..|...|| |||.|.|||| .||| |||||..|..|.||..|
BPUM_1087___y 126 ACCCCAATT-----TGATATAAAATCTCAATTCGCTGCATTAAGAATGAG 170
BSNT_01938___ 171 CAG-AAAAAACGGAAAGTATGTCCTTACATTAAAGGAGCC---------- 209
|| |||||||||..|||..||.||.||.||||||||.||
BPUM_1087___y 171 -AGAAAAAAACGGTCAGTGGGTTCTCACGTTAAAGGAACCACACGAAATA 219
BSNT_01938___ 210 GGCTGATGTGGGGCTTCTGGAAACGCACCA-------GCAGCT--TTCAG 250
|||| |.||.|||||.||||| ||..|| ||||.
BPUM_1087___y 220 GGCT----------TGCTAGAAACCCACCAAACGATCGCTCCTCCTTCAA 259
BSNT_01938___ 251 AGGTATCAGATCTCGCTG--GATTTTCAGTTCCCGAGGGCCCTGTGAAG- 297
| |..|| |||||||||||.||.|..| ||||||
BPUM_1087___y 260 A------------CCTTGACGATTTTCAGTTGCCAAAAG----GTGAAGT 293
BSNT_01938___ 298 GACCAGCTGCACAAGCTTCAGATCGATACGGATGCCATTCAA-------- 339
| |||| |||.||| ||| |.||..|.| |||||||
BPUM_1087___y 294 G----GCTG-ACAGGCT--AGA-CCATTTGAA---CATTCAAAAGGATCA 332
BSNT_01938___ 340 -------TACTTTGGATCTTTAGCAACAAACCGT-----GCGGAAAAAGA 377
||.|||||.||..|.| ||.||| ||.|||||| |
BPUM_1087___y 333 AATTGTGTATTTTGGTTCACTTG-----AAACGTCGAGAGCTGAAAAA-A 376
BSNT_01938___ 378 --AACAGAAAAAGGCTTAATAGTTTTAGACCACAGCCGATATTTAAATAA 425
|.|| ||.||||||||||.|||||.||.||||||||||||||||....
BPUM_1087___y 377 TGATCA-AAGAAGGCTTAATTGTTTTGGATCACAGCCGATATTTAACAGT 425
BSNT_01938___ 426 AGAGGACTATGAAATTGAATTTGAGGCGGCGGATTGGCATGAGGG---CA 472
|||||||||.|||.||||||||||.| ||||.| .|
BPUM_1087___y 426 AGAGGACTACGAACTTGAATTTGAAG-------------TGAGCGACCTA 462
BSNT_01938___ 473 GAAAAGCTTTC-GAGAAGC--------------TGCTTCAGCAA-TTCAG 506
|||| || ||.||.| ||||.||.||| ||||
BPUM_1087___y 463 GAAA-----TCGGACAAACCGCATTCTCCGCATTGCTCCAACAATTTCA- 506
BSNT_01938___ 507 CATTCCTCAGCGCGAA--ACCAAAAATAAAATTCTGCGTTTTTATGAAG- 553
|.||| |.|..|||| ||.|||||.|||.|..|.|||||||||||||
BPUM_1087___y 507 -AATCC-CTGTACGAAACACGAAAAACAAAGTCGTACGTTTTTATGAAGA 554
BSNT_01938___ 554 AAAAACGAA-----AGTCTATATAA 573
|||||.||| ||..||.||.|
BPUM_1087___y 555 AAAAATGAAAACACAGAATAGATGA 579
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