Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01936 and BPUM_1086
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01936.1.24716.seq
# -bsequence dna-align/BPUM_1086___yjbJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01936-BPUM_1086___yjbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01936-BPUM_1086___yjbJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01936
# 2: BPUM_1086___yjbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity: 492/859 (57.3%)
# Similarity: 492/859 (57.3%)
# Gaps: 212/859 (24.7%)
# Score: 1268.5
#
#
#=======================================
BSNT_01936 1 GTGAATGTAACG--AATTGGGCAGCTT---TACTT----CAGCTTCAGGC 41
.|| ||| |||| ||| ||.||| |.||| |||||.||.||
BPUM_1086___y 1 ATG-ATG-AACGTCAAT----CAACTTCAATCCTTTATGCAGCTCCAAGC 44
BSNT_01936 42 ACT----ACAGTCCATATCTAATGC-------ACGCA---GCAGCTCGGA 77
.|| ||..|.|| |||..|..| ||||| ||||..|||.
BPUM_1086___y 45 GCTTAAAACGTTACA-ATCAGACCCTGGACAAACGCAAATGCAGGGCGGC 93
BSNT_01936 78 CACTCAGAATACGGA-----AAGCC----------CGC--TTTCAAG--- 107
|| ||||| ||.| |.||| ||| ||.||||
BPUM_1086___y 94 CA---AGAAT-CGAATGCACAGGCCTCATTTCAGTCGCTGTTGCAAGATT 139
BSNT_01936 108 TTTTAGCTCTTTGC---TCAGCCAATATACAAACGGTCTGACATCT-CAG 153
|||||| || |||| ||| |.|.||..|| |.|
BPUM_1086___y 140 TTTTAG------GCGGATCAG--AAT----------TATCACGCCTCCCG 171
BSNT_01936 154 CAATCAGCACTTTCTTCAT---------CGCCAAGCCCGCTCAGCATGCT 194
|.||| || |||||.||| || |.||..|||.| .|||
BPUM_1086___y 172 CTATC--CA-TTTCTGCATTTATGGGAACG----GACCCATCAAC-GGCT 213
BSNT_01936 195 --GAACA--------GCGCGAATACAACAGCGCCGTCA-------CTGCT 227
||||| ||.|| ||||| |.| || |||||
BPUM_1086___y 214 CCGAACACACAATATGCACG--TACAA-ATC-----CATACTTATCTGCT 255
BSNT_01936 228 TTCAGCGTATGG----------------GCTTAAC--TCATATACGA--- 256
.|| || ||| |||.||| ||||.|.|||
BPUM_1086___y 256 ATC-GC---TGGCGGTGAAGAGCTTCAAGCTCAACCTTCATTTGCGAATG 301
BSNT_01936 257 --GCAGCAATTCAAGTTCA------------------GTC----ACAAAA 282
|| .||||| ||.|.|| ||| ||||.|
BPUM_1086___y 302 ACGC-TCAATT-AAATACAGCGAATGGTATTGGAAATGTCTTAAACAACA 349
BSNT_01936 283 GCGGCAGAAAGCAC--TGAAACAGCTGCTGCA---GATTCAGCTTCAAAC 327
||..||....||.| |.|||..||||.|.|| |..|||.|||||||
BPUM_1086___y 350 GCTACACGCCGCCCCTTCAAAAGGCTGTTTCAAGCGGCTCATCTTCAAA- 398
BSNT_01936 328 AAACATGAAGCAAATCAGATCAGTTCGGGAGACTTCTCTATTGACAGTGC 377
|.|.||.||.||||| ||.
BPUM_1086___y 399 AGAAATTAATCAAAT--------------------------------TGT 416
BSNT_01936 378 GATTAAAAAAGCCGCTGATAAATATGGCGTTGATGAAAAACTGATCCGTG 427
| |.|.|||.| |||.|.|||.||||.|||...|||||.|||||.|.||
BPUM_1086___y 417 G-TCACAAATG--GCTCAAAAACATGGTGTTCCAGAAAAGCTGATTCATG 463
BSNT_01936 428 CCGTCATCAAACAGGAATCAGGCTTTAATGCAAAAGCGGTCAGCGGAGCA 477
|.||.|||||.||.|||||.||||.|..|.|.||.||.||.|||...|||
BPUM_1086___y 464 CGGTGATCAAGCAAGAATCTGGCTATCGTACGAATGCAGTGAGCCATGCA 513
BSNT_01936 478 GGTGCGATGGGCCTCATGCAGCTGATGCCGTCAACAGC-AAGCTCACTTG 526
||.||..|.|||||.||||||||.|||||.||.||||| ||| |||||||
BPUM_1086___y 514 GGCGCACTTGGCCTTATGCAGCTTATGCCATCTACAGCTAAG-TCACTTG 562
BSNT_01936 527 GCGTTTCCAATCCGCTTGATCCGCAGCAAAATGTGGAGGGCGGAACGAAA 576
||||....|||.|..|||||.||...|||||..|.||||||||.|||||.
BPUM_1086___y 563 GCGTGAATAATGCCTTTGATGCGGCCCAAAACATTGAGGGCGGGACGAAG 612
BSNT_01936 577 TATTTAAAACAAATGCTGGATAAATACGGCGGCAATGTGTCTATGGCATT 626
|||.|||||||||||||..|.|||||....||.|||||.||..|.||.||
BPUM_1086___y 613 TATATAAAACAAATGCTTCAAAAATATAATGGAAATGTCTCACTCGCCTT 662
BSNT_01936 627 AGCGGCTTACAACGCCGGACCGGGGAATGTTGACCGATACGGAGGCATTC 676
|||.||||||||.||.||..|.||.||||||||...||||||.|||||||
BPUM_1086___y 663 AGCTGCTTACAATGCAGGCTCAGGAAATGTTGATAAATACGGCGGCATTC 712
BSNT_01936 677 CTCCTTTCCAAGAAACGAAAAACTATGTAAAAAAAATAACTTCAGCTTAT 726
|.||.||..|||||||..||||.||||||||.|||||.||..||...|||
BPUM_1086___y 713 CACCATTTAAAGAAACACAAAATTATGTAAAGAAAATCACAGCACAATAT 762
BSNT_01936 727 TACGCGTAA 735
|.|||.|||
BPUM_1086___y 763 TTCGCTTAA 771
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