Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01936 and BPUM_1086

See Amino acid alignment / Visit BSNT_01936 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_01936.1.24716.seq
#    -bsequence dna-align/BPUM_1086___yjbJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01936-BPUM_1086___yjbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01936-BPUM_1086___yjbJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01936
# 2: BPUM_1086___yjbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity:     492/859 (57.3%)
# Similarity:   492/859 (57.3%)
# Gaps:         212/859 (24.7%)
# Score: 1268.5
# 
#
#=======================================

BSNT_01936         1 GTGAATGTAACG--AATTGGGCAGCTT---TACTT----CAGCTTCAGGC     41
                     .|| ||| ||||  |||    ||.|||   |.|||    |||||.||.||
BPUM_1086___y      1 ATG-ATG-AACGTCAAT----CAACTTCAATCCTTTATGCAGCTCCAAGC     44

BSNT_01936        42 ACT----ACAGTCCATATCTAATGC-------ACGCA---GCAGCTCGGA     77
                     .||    ||..|.|| |||..|..|       |||||   ||||..|||.
BPUM_1086___y     45 GCTTAAAACGTTACA-ATCAGACCCTGGACAAACGCAAATGCAGGGCGGC     93

BSNT_01936        78 CACTCAGAATACGGA-----AAGCC----------CGC--TTTCAAG---    107
                     ||   ||||| ||.|     |.|||          |||  ||.||||   
BPUM_1086___y     94 CA---AGAAT-CGAATGCACAGGCCTCATTTCAGTCGCTGTTGCAAGATT    139

BSNT_01936       108 TTTTAGCTCTTTGC---TCAGCCAATATACAAACGGTCTGACATCT-CAG    153
                     ||||||      ||   ||||  |||          |.|.||..|| |.|
BPUM_1086___y    140 TTTTAG------GCGGATCAG--AAT----------TATCACGCCTCCCG    171

BSNT_01936       154 CAATCAGCACTTTCTTCAT---------CGCCAAGCCCGCTCAGCATGCT    194
                     |.|||  || |||||.|||         ||    |.||..|||.| .|||
BPUM_1086___y    172 CTATC--CA-TTTCTGCATTTATGGGAACG----GACCCATCAAC-GGCT    213

BSNT_01936       195 --GAACA--------GCGCGAATACAACAGCGCCGTCA-------CTGCT    227
                       |||||        ||.||  ||||| |.|     ||       |||||
BPUM_1086___y    214 CCGAACACACAATATGCACG--TACAA-ATC-----CATACTTATCTGCT    255

BSNT_01936       228 TTCAGCGTATGG----------------GCTTAAC--TCATATACGA---    256
                     .|| ||   |||                |||.|||  ||||.|.|||   
BPUM_1086___y    256 ATC-GC---TGGCGGTGAAGAGCTTCAAGCTCAACCTTCATTTGCGAATG    301

BSNT_01936       257 --GCAGCAATTCAAGTTCA------------------GTC----ACAAAA    282
                       || .||||| ||.|.||                  |||    ||||.|
BPUM_1086___y    302 ACGC-TCAATT-AAATACAGCGAATGGTATTGGAAATGTCTTAAACAACA    349

BSNT_01936       283 GCGGCAGAAAGCAC--TGAAACAGCTGCTGCA---GATTCAGCTTCAAAC    327
                     ||..||....||.|  |.|||..||||.|.||   |..|||.||||||| 
BPUM_1086___y    350 GCTACACGCCGCCCCTTCAAAAGGCTGTTTCAAGCGGCTCATCTTCAAA-    398

BSNT_01936       328 AAACATGAAGCAAATCAGATCAGTTCGGGAGACTTCTCTATTGACAGTGC    377
                     |.|.||.||.|||||                                ||.
BPUM_1086___y    399 AGAAATTAATCAAAT--------------------------------TGT    416

BSNT_01936       378 GATTAAAAAAGCCGCTGATAAATATGGCGTTGATGAAAAACTGATCCGTG    427
                     | |.|.|||.|  |||.|.|||.||||.|||...|||||.|||||.|.||
BPUM_1086___y    417 G-TCACAAATG--GCTCAAAAACATGGTGTTCCAGAAAAGCTGATTCATG    463

BSNT_01936       428 CCGTCATCAAACAGGAATCAGGCTTTAATGCAAAAGCGGTCAGCGGAGCA    477
                     |.||.|||||.||.|||||.||||.|..|.|.||.||.||.|||...|||
BPUM_1086___y    464 CGGTGATCAAGCAAGAATCTGGCTATCGTACGAATGCAGTGAGCCATGCA    513

BSNT_01936       478 GGTGCGATGGGCCTCATGCAGCTGATGCCGTCAACAGC-AAGCTCACTTG    526
                     ||.||..|.|||||.||||||||.|||||.||.||||| ||| |||||||
BPUM_1086___y    514 GGCGCACTTGGCCTTATGCAGCTTATGCCATCTACAGCTAAG-TCACTTG    562

BSNT_01936       527 GCGTTTCCAATCCGCTTGATCCGCAGCAAAATGTGGAGGGCGGAACGAAA    576
                     ||||....|||.|..|||||.||...|||||..|.||||||||.|||||.
BPUM_1086___y    563 GCGTGAATAATGCCTTTGATGCGGCCCAAAACATTGAGGGCGGGACGAAG    612

BSNT_01936       577 TATTTAAAACAAATGCTGGATAAATACGGCGGCAATGTGTCTATGGCATT    626
                     |||.|||||||||||||..|.|||||....||.|||||.||..|.||.||
BPUM_1086___y    613 TATATAAAACAAATGCTTCAAAAATATAATGGAAATGTCTCACTCGCCTT    662

BSNT_01936       627 AGCGGCTTACAACGCCGGACCGGGGAATGTTGACCGATACGGAGGCATTC    676
                     |||.||||||||.||.||..|.||.||||||||...||||||.|||||||
BPUM_1086___y    663 AGCTGCTTACAATGCAGGCTCAGGAAATGTTGATAAATACGGCGGCATTC    712

BSNT_01936       677 CTCCTTTCCAAGAAACGAAAAACTATGTAAAAAAAATAACTTCAGCTTAT    726
                     |.||.||..|||||||..||||.||||||||.|||||.||..||...|||
BPUM_1086___y    713 CACCATTTAAAGAAACACAAAATTATGTAAAGAAAATCACAGCACAATAT    762

BSNT_01936       727 TACGCGTAA    735
                     |.|||.|||
BPUM_1086___y    763 TTCGCTTAA    771


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