Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01917 and BPUM_1073
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_01917___oppD.1.24716.seq
# -bsequence dna-align/BPUM_1073___oppD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01917___oppD-BPUM_1073___oppD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01917___oppD-BPUM_1073___oppD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01917___oppD
# 2: BPUM_1073___oppD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1128
# Identity: 756/1128 (67.0%)
# Similarity: 756/1128 (67.0%)
# Gaps: 123/1128 (10.9%)
# Score: 2322.5
#
#
#=======================================
BSNT_01917___ 1 ---GTG-----ACACG---CCTAT--TAGAAGTAAAAGATTTAGCAATTT 37
.|| |||.| || || ||.|||||||.||||||...||.|
BPUM_1073___o 1 ATGATGAATAAACAAGAAACC-ATTCTAAAAGTAAATGATTTAAATATCT 49
BSNT_01917___ 38 CATTTAAAACATATGGCGGAGAGGTTCAGGCGATCCGCGGAGTGAATTTC 87
|||||.|.||.|.||..||.||.||..||||.||..|.||.||||||||
BPUM_1073___o 50 CATTTCACACGTTTGCTGGTGAAGTCAAGGCAATAAGAGGTGTGAATTT- 98
BSNT_01917___ 88 CATCTGGAT-----AAAGGAGAGACACTGGCGATTGTTGGAGAATCAGGT 132
||.|| |||||.|||||.||.||.||||||||||||||.|||
BPUM_1073___o 99 ----TGAATTAAAGAAAGGTGAGACGCTTGCCATTGTTGGAGAATCTGGT 144
BSNT_01917___ 133 TCCGGAAAAAGTGTAACCTCTCAAGCGATTATGAAGCTGATTCC--AATG 180
||.||||||...||.||.||..||.|.||.|||..|.||.|||| |||
BPUM_1073___o 145 TCAGGAAAATCGGTTACTTCAAAATCAATCATGGGGTTGCTTCCTAAAT- 193
BSNT_01917___ 181 C---CTCCGGGTTATTTCAAACGCGGTGAGATCCTGTTTGAAG-GAAAGG 226
| ||| |.|..|.|||...||.|||||..|||||.||| .|||
BPUM_1073___o 194 CTAACTC----TGAAGTGAAAAAAGGCGAGATTTTGTTTCAAGACAAA-- 237
BSNT_01917___ 227 ATCT-------AGTGCCGCTGTCCGAAAAAGAAATGCAAAATGTCCGGGG 269
|.|| | ||.||.||.|||.||||||||||..|.||.||
BPUM_1073___o 238 AACTTAACAAAA------CTTTCTGATAAACAAATGCAAAAAATACGTGG 281
BSNT_01917___ 270 AAAAGAGATCGGCATGATATTCCAAGATCCGATGACCTCATTAAATCCAA 319
.|||||.||.|..|||.|.||.||||||||.|||||||||||||||||.|
BPUM_1073___o 282 GAAAGATATTGCAATGGTCTTTCAAGATCCAATGACCTCATTAAATCCTA 331
BSNT_01917___ 320 CGATGAAAGTCGGTAAACAAATTACGGAAGTGCTTTTTAAACA-CGAGAA 368
|.||||.|.|.||.||||||||||..|||....||||.||||| | ||
BPUM_1073___o 332 CAATGACAATTGGCAAACAAATTATAGAACCAATTTTAAAACATC---AA 378
BSNT_01917___ 369 AAT-CTCA--AAGGAAGCGGCTAAAAAACGCGCGGTTGAACTGCT-GGAA 414
||| || | ||.||||..||||.||||.|.|||.||||.||.|| .|..
BPUM_1073___o 379 AATGCT-AGTAAAGAAGAAGCTAGAAAAAGAGCGCTTGAGCTACTCAGCC 427
BSNT_01917___ 415 TTAGTCGGTATCCCAATGCCGGAAAAGCGGGTGAACCAATTTCCGCACGA 464
|| ||.|||||.||||..||.|||.|..||.|.||.||||.|||.||..|
BPUM_1073___o 428 TT-GTAGGTATTCCAAAACCTGAACAAAGGTTTAAGCAATATCCTCATCA 476
BSNT_01917___ 465 ATTTTCAGGCGGGATGAGGCAGCGGGTTGTCATTGCCATGGCGCTTGCAG 514
|||||||||.||.|||||.||..|||||||..|.||.||.||.|||||..
BPUM_1073___o 477 ATTTTCAGGTGGTATGAGACAAAGGGTTGTGGTGGCAATTGCTCTTGCTT 526
BSNT_01917___ 515 CGAATCCGAAGCTTCTGATCGCCGATGAGCCGACAACTGCACTTGATGTA 564
..|||||.||..|..|.||.||.||||||||||||||.||..|.|||||.
BPUM_1073___o 527 GTAATCCTAAAATATTAATTGCTGATGAGCCGACAACAGCGTTAGATGTT 576
BSNT_01917___ 565 ACGATTCAAGCGCAAATTCTGGAATTGATGAAGGATTTGCAAAAGAAAAT 614
||.|||||||||||||||.|.|||.|||||||||||.|.|||||||||||
BPUM_1073___o 577 ACAATTCAAGCGCAAATTTTAGAACTGATGAAGGATCTACAAAAGAAAAT 626
BSNT_01917___ 615 TGACACGTCCATCATCTTTATTACACACGATCTTGGTGTTGTGGCAAATG 664
|||.||.||.||.|||||||||||.||.|||.|.||.||.||.||.||||
BPUM_1073___o 627 TGAAACATCGATTATCTTTATTACGCATGATTTAGGGGTCGTTGCGAATG 676
BSNT_01917___ 665 TTGCTGACCGGGTCGCTGTCATGTACGCGGGACAGATTGTAGAAACTGGT 714
|.|||||.||.||.||.||.|||||.|..||.||.|||||.||.|.||||
BPUM_1073___o 677 TAGCTGATCGTGTAGCGGTTATGTATGGTGGTCAAATTGTCGAGATTGGT 726
BSNT_01917___ 715 ACGGTAGACGAAATCTTCTACGATCCGAGA-CATCCGTACACTTGGGGGC 763
||.||.||.||.||.||||| .|.||.|.| |||||.||.||.| ||||.
BPUM_1073___o 727 ACAGTTGATGAGATTTTCTA-TAACCCACAGCATCCTTATACAT-GGGGA 774
BSNT_01917___ 764 TTCTT--GCATCCATGCCGACACTGG-----AAAGTTCAGGAGAGGAAGA 806
||.|| || ||.|||||.|..|||| |||| |||||| ||
BPUM_1073___o 775 TTATTAAGC-TCTATGCCTAGTCTGGACGCAAAAG---AGGAGA--AA-- 816
BSNT_01917___ 807 GCTGA-CTGCCATTCCGGGCACACCGCCTGATTTGACAAACCCGCCAAAA 855
|.| .|||.||.||.||.||.|||||.||.|||..|||.||.||||||
BPUM_1073___o 817 --TTATTTGCTATACCTGGTACGCCGCCAGACTTGCTAAATCCTCCAAAA 864
BSNT_01917___ 856 GGAGATGCTTTTGCCCTGC--GGAGCCCTTATGCGATGAAAATCGATTTT 903
||.||..|.|||| |||| |.|..|..|||||.|||||||||||||||
BPUM_1073___o 865 GGCGACCCGTTTG--CTGCTAGAAATCAATATGCAATGAAAATCGATTTT 912
BSNT_01917___ 904 GAACAGGAGCCGCCAATGTTTA----AGGTATCTGATACTCATTATGTCA 949
||||||.||||||| |||| |.||.||.||.||.||||||| ||
BPUM_1073___o 913 GAACAGCAGCCGCC----TTTATATCAAGTGTCAGAAACGCATTATG-CA 957
BSNT_01917___ 950 AAT-CGTGGCTGCTTCATCCCGACGCGCCAAAGGTAGAGCCGCCAGAAGC 998
..| |.|||||..|.|||||..|.|||||.||.|||||.||.||.|||.|
BPUM_1073___o 958 GCTACATGGCTATTACATCCTAATGCGCCCAAAGTAGAACCTCCCGAATC 1007
BSNT_01917___ 999 GGTAAAAGCGAA-AATGCG------TAAACTG-GCAAACACGTTTGAAAA 1040
|.| .||||.|| |||||| |||| | |||||.|.|...|.|..
BPUM_1073___o 1008 GAT-TAAGCAAAGAATGCGACAATTTAAA--GCGCAAAAAGGGGGGGATC 1054
BSNT_01917___ 1041 ACCTGTCTTAGTGAGAGAAGGTGAATGA 1068
||.| |.|||||
BPUM_1073___o 1055 ACAT---TGAGTGA-------------- 1065
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