Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01916 and BPUM_1072
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_01916___oppC.1.24716.seq
# -bsequence dna-align/BPUM_1072___oppC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01916___oppC-BPUM_1072___oppC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01916___oppC-BPUM_1072___oppC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01916___oppC
# 2: BPUM_1072___oppC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1144
# Identity: 611/1144 (53.4%)
# Similarity: 611/1144 (53.4%)
# Gaps: 338/1144 (29.5%)
# Score: 1351.5
#
#
#=======================================
BSNT_01916___ 1 ---ATG---CAG---------AACATTCCGAAAAACATGTTTGAACCAGC 35
||| ||| ||.|||...||||...|.||||||||.||
BPUM_1072___o 1 ATGATGAAACAGCAAGAAGAAAATATTGATAAAAGTCTATTTGAACCCGC 50
BSNT_01916___ 36 CGCAGCGAATGCCGGCGA---------TGCAGAAAAAA-TAAGTAAAAAG 75
||..|..|| |||.||||||| |.|| |||...
BPUM_1072___o 51 ---------TGGTGTTGATACATTTTCTGCTGAAAAAATTGAG-AAACCT 90
BSNT_01916___ 76 AGCCT---TTCCCTCTGGAAAGATGCGATGCTTCGCTT------------ 110
||.|| || ..|||.||||.|| ||| ||||
BPUM_1072___o 91 AGTCTGAATT---ATTGGCAAGACGC-ATG----GCTTAGAATCAAAAAG 132
BSNT_01916___ 111 -------CCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATT-ATCGT 152
||||||...||||.|| |.||.| .|||||.|| ||.||
BPUM_1072___o 133 AATAAAGCCGCAGTTGTAAGTTT--AGTGAT----TTTATTTTTAATTGT 176
BSNT_01916___ 153 GCTCAT---TATC------------CTTA-TGGCA---ATTTT-----TG 178
..|||| |||| .||| |||.| ||||| |.
BPUM_1072___o 177 ATTCATGGCTATCGTCGGACCATTAATTAGTGGTAAAGATTTTAGTACTC 226
BSNT_01916___ 179 CGCCGATGTTCTCAAG---------------GTAT-----GATTA----- 203
.|.|.|.| |||.||| |.|| |||||
BPUM_1072___o 227 AGACAACG-TCTGAAGCGAACCTACCTCCTCGAATCCAAGGATTAGAGCA 275
BSNT_01916___ 204 ------------TTCAACTACT--------AATCTCTTAA--------AT 225
|.||..|||| || |.||.|| ||
BPUM_1072___o 276 TGTTAGCTTCCTTCCATTTACTGGGGAAAGAA-CGCTGAAAAGTGGTGAT 324
BSNT_01916___ 226 GCGGATAAGCCCCCTT-----CAAAA-------GATC------ACTGGTT 257
|.||..|| ||||| ||||| |||| |||||||
BPUM_1072___o 325 GTGGTCAA---CCCTTATGAACAAAAAGGAATTGATCATTACTACTGGTT 371
BSNT_01916___ 258 CGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGG 307
.||.||.|||.||||||||.|.||..|.|||...|||...|||..|||..
BPUM_1072___o 372 TGGTACGGATAATCTTGGGAGAGATCTATTCACACGTGTGTGGAAAGGAA 421
BSNT_01916___ 308 CGCGAATCTCAATCTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTG 357
|.|.|||||||.|..||||.|.|||||..||.|||||..|.|||||..|.
BPUM_1072___o 422 CTCAAATCTCACTGCTTATTGCTGTTGTTGCAGCTGTGATCGATTTAATT 471
BSNT_01916___ 358 ATCGGCGT--CATTTGGGGGAGC-ATTTCAGG---CTTCCGCGGAGGCAG 401
||.||.|| |.|.| ||.|| |||||.|| .||..|||| |
BPUM_1072___o 472 ATTGGTGTTGCTTAT---GGTGCTATTTCTGGTTATTTTGGCGG-----G 513
BSNT_01916___ 402 AACGGACGAAATCATGATGCGTAT----CG----CT-GATATCCT-TTGG 441
|| ||.|.||.||||| || || || ||..|.|| .|||
BPUM_1072___o 514 AA------AATTGATAATGCG-ATGCAACGTGTTCTAGAGGTTCTAATGG 556
BSNT_01916___ 442 GCAGTTCCTTCATTA-TTAATGGTTATCTTACTGATGGTTGT--TCTTCC 488
|.| |||| || | ||.||.|||.||.||.|.|||.||.| ||||
BPUM_1072___o 557 GTA-TTCC--CA--ACTTGATCGTTGTCATATTAATGATTCTCGTCTT-- 599
BSNT_01916___ 489 GAAA-----GGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTG 533
||| ||..|| ||.|.|||||||||||..|.|..|||||.||.||
BPUM_1072___o 600 -AAAGCCAGGGATTA-TTCCAATTATTATTGCTCTAAGTATTACCGGGTG 647
BSNT_01916___ 534 GATTAATATGGCCAGAATCGTGCGCGGACAAGTGCTGCAGCTG-AAGAAT 582
|||.|.|||||||||..|.||.||.|..|||||..||.||||| |||||
BPUM_1072___o 648 GATCAGTATGGCCAGGGTTGTACGAGCCCAAGTCATGAAGCTGAAAGAA- 696
BSNT_01916___ 583 CAGGAGTATGTGCTTGCTTCAC-AGACAC--TGGG----TGCA-----AA 620
|||||.|||||.||.|| |.| ||| || |||| .||| ||
BPUM_1072___o 697 CAGGAATATGTACTAGC--CGCTAGA-ACTTTGGGATTAAGCAACTTTAA 743
BSNT_01916___ 621 AACATCCCGTCTTCTGTTTAAACATATCGTGCCAAACGCAATGGGTTCTA 670
|| ||.|.||||||||.||..||||.|||..||..|||
BPUM_1072___o 744 AA---------TTATCTTTAAACACATGTTGCCTAACTTAACAGGT---- 780
BSNT_01916___ 671 TTTTGGTCACGAT------GACACTG---ACAGTTCCTACTGCGATTTT- 710
||.|.||| .|||.|| ||..||||||.|||.|||||
BPUM_1072___o 781 -----GTGATGATTATTAATACAATGTTCACCATTCCTAGTGCAATTTTC 825
BSNT_01916___ 711 TACAGAAGCCTTTTTAAGCTAT-TTGGGACTCGGTGTTCCGGCTCC---- 755
|.| |||||.||.|||||.|.| |||| |||..|.||||
BPUM_1072___o 826 TTC-GAAGCATTCTTAAGTTTTATTGG--------GTTAGGTCTCCAAGA 866
BSNT_01916___ 756 GCTGGCAAGCT----GGGGAACGATGGCTTCT----GACGGAT------- 790
|| ..|||||| ..||||| |||..| |||||||
BPUM_1072___o 867 GC-CACAAGCTTCACTAGGAAC----GCTAATTGAAGACGGATTTAAATC 911
BSNT_01916___ 791 --TGCCTGCATTGACCTATTATC-CGTGGCGTTTATTCTTCCCTGCCGGA 837
||..|||.|| ||.| |||| ..|| |||||| ||.|| |
BPUM_1072___o 912 AATGATTGCTTT--CCCA-TATCAAATG--GTTTAT-----CCAGC---A 948
BSNT_01916___ 838 TTTATC-----TGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACGGA 882
.||||| || |||..|||.|.|.|||||||.||||.|.||||||.
BPUM_1072___o 949 ATTATCATTAGTG--TTATCATGATCGTCTTTAACCTTGTTGCCGACGGT 996
BSNT_01916___ 883 TTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA-------- 918
.|.|||||.|||.|.|||||.| ||||.|
BPUM_1072___o 997 GTGAGAGATGCACTTGATCCAA--------AAATGAAAGATTAG 1032
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