Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01909 and BPUM_1067

See Amino acid alignment / Visit BSNT_01909 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_01909___yjbA.1.24716.seq
#    -bsequence dna-align/BPUM_1067___yjbA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01909___yjbA-BPUM_1067___yjbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01909___yjbA-BPUM_1067___yjbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01909___yjbA
# 2: BPUM_1067___yjbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 761
# Identity:     581/761 (76.3%)
# Similarity:   581/761 (76.3%)
# Gaps:          16/761 ( 2.1%)
# Score: 2146.5
# 
#
#=======================================

BSNT_01909___      1 ATGTTATTTCTTCATGATGTGTGGGTCAATTGGTTTGAAGGGGAAGAAAA     50
                     |||||||||||||||||.||.|||||.|||||||||||||||||||||||
BPUM_1067___y      1 ATGTTATTTCTTCATGACGTATGGGTGAATTGGTTTGAAGGGGAAGAAAA     50

BSNT_01909___     51 TGGCTACAATGTATGCCACTTTCACGAATGGCGCAAGGAAGATACGGTTG    100
                     ||||||||||||.||.||.|||||.||.|||||.|||||.||.|..||.|
BPUM_1067___y     51 TGGCTACAATGTGTGTCATTTTCATGAGTGGCGTAAGGAGGACAGTGTGG    100

BSNT_01909___    101 AGCTTTTGGATCAGGTTCCGCTGCTAAGGGTGCCGTCAGTAC--TGTTTC    148
                     ||||.||.|||||.||.||..|.||.|.|||||.|  |||.|  |||.|.
BPUM_1067___y    101 AGCTGTTAGATCAAGTACCTTTACTTAAGGTGCAG--AGTCCTTTGTATG    148

BSNT_01909___    149 ATTACATAGAAAATGATTTGTCAGAGCTTCCGAA-AGGTTTGCTTGAAGA    197
                     ||||||||||.||||||.|.|||||.||.||||| |.| .||||.|||..
BPUM_1067___y    149 ATTACATAGAGAATGATCTTTCAGAACTGCCGAAGACG-CTGCTAGAATC    197

BSNT_01909___    198 CGTACATCAGAAATCGTACATTCGGAAAAATCATGAGCGGACAAAGCTTG    247
                     .|||..|.|||||||.||.|||||.|||||||||||.|||...||.||.|
BPUM_1067___y    198 TGTATTTGAGAAATCATATATTCGAAAAAATCATGAACGGCGTAAACTAG    247

BSNT_01909___    248 AGTATTGTTTTGTCGTAACAGACGGAATCGGCATTTTGGCTGTCGACACG    297
                     |.|||||.|||||.||.||.|||||.|||.|.|||.|.||.||.||.|||
BPUM_1067___y    248 AATATTGCTTTGTGGTCACGGACGGTATCCGAATTATTGCGGTGGATACG    297

BSNT_01909___    298 ATCGGCTACACGATCCCTGTCAGAAAAAGCCGTTTAATCCCAAGACAGGA    347
                     ||.||.||..|.||.|||||.||.||||||||.|||||||||||.|||||
BPUM_1067___y    298 ATTGGGTATTCCATTCCTGTGAGGAAAAGCCGCTTAATCCCAAGGCAGGA    347

BSNT_01909___    348 GCAGCTCGTTTATGAAATGGTAAAAGATGTAGAGCCTGAAACATATGAAT    397
                     |||..|.||.|||||||||||.||||||||..||.||||...||||||||
BPUM_1067___y    348 GCAATTGGTGTATGAAATGGTGAAAGATGTGAAGGCTGAGGAATATGAAT    397

BSNT_01909___    398 TTGAGCCAAAGA-AG-CTGGAATCCTCCAAGGAATATCACATCTTATCAT    445
                     ||  .|..|.|| || ||.||.||.||.|||||.|||||.||.||.||.|
BPUM_1067___y    398 TT--TCTCAGGACAGTCTTGAGTCGTCGAAGGAGTATCATATTTTGTCTT    445

BSNT_01909___    446 TA--GCACCAGAACATGTCAGAGGACTGACTAGAAAAGAACGGCAAATTA    493
                     ||  ||..|||.|||  ||||.|||||.||.|||||||||.|.||..|.|
BPUM_1067___y    446 TACCGCCGCAGCACA--TCAGCGGACTAACAAGAAAAGAAAGACAGTTGA    493

BSNT_01909___    494 AGCAGCTGATGTTTATGGCGCTTGACCAATTAAAAGGGCTGAAAAATCGG    543
                     |||||||.||||||||||||||.||.|||||||||||.||..||||..||
BPUM_1067___y    494 AGCAGCTCATGTTTATGGCGCTCGATCAATTAAAAGGTCTTCAAAACAGG    543

BSNT_01909___    544 GCTGAAATCGGCTACTGGTACACAGAGTGGAATCCGCATATGTATGAACA    593
                     ||.||.||.|..||.|||||.||.||.|||||.||||.||||||..|.||
BPUM_1067___y    544 GCGGAGATTGCGTATTGGTATACGGAATGGAACCCGCGTATGTACAATCA    593

BSNT_01909___    594 AATCAAAAGGATGAGCTTTGAAGAGATTTGGGACATGCTGTATAACGAAA    643
                     |||.||..|.|||...||.||||||||||||.|||||||.||.||.||||
BPUM_1067___y    594 AATTAAGCGAATGTCATTCGAAGAGATTTGGAACATGCTTTACAATGAAA    643

BSNT_01909___    644 CAATTGAAGGCTGGTCGGACAAGCACCTAGCTTTTTGCGAAAACCTAATA    693
                     |.||.||.||.|||||.||.||.||..||||.||.||.|||||..|.||.
BPUM_1067___y    644 CCATCGATGGATGGTCAGAGAATCATTTAGCCTTCTGTGAAAAAATGATT    693

BSNT_01909___    694 AAAGGACAGCCTTTTTTCGAAAAGCTTTGGGAAATGGAAAACGAATCAAA    743
                     ||.||||||||.|||||.|||||||||||||||||||||||.||||||||
BPUM_1067___y    694 AAGGGACAGCCGTTTTTTGAAAAGCTTTGGGAAATGGAAAATGAATCAAA    743

BSNT_01909___    744 GGTCAACTGA-    753
                     |||.|| |.| 
BPUM_1067___y    744 GGTGAA-TTAG    753


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01909 and BPUM_1067

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
