Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01907 and BPUM_1064
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_01907___appC.1.24716.seq
# -bsequence dna-align/BPUM_1064___appC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01907___appC-BPUM_1064___appC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01907___appC-BPUM_1064___appC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01907___appC
# 2: BPUM_1064___appC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 944
# Identity: 654/944 (69.3%)
# Similarity: 654/944 (69.3%)
# Gaps: 76/944 ( 8.1%)
# Score: 2143.0
#
#
#=======================================
BSNT_01907___ 1 ATGTCAGAGCTGCAAACAACTCCCTCGCCGGAGATCAGGCTGAAA-GAAA 49
.||..|||..||| |.|..||| ||.||| .|||
BPUM_1064___a 1 ---------ATGGGAACGCCTC-----CTGTTGAT----CTCAAATTAAA 32
BSNT_01907___ 50 ATA-----TTTCGAAAAAGCCAGAAACAATGACAAAG---ATTTTCTGGG 91
|.| ||.||..|||||||||.||.||| |...| |||||.||.|
BPUM_1064___a 33 AGAGGGACTTCCGCCAAAGCCAGAGACGATG-CTGCGTTTATTTTGTGAG 81
BSNT_01907___ 92 GAAAATTCTCGAAAAACAAACTGGCCATTTTAGGTGCCGTTATTCTT-TT 140
|||||.|..|||||.|||.||||..||...||..||||.| |||| ||
BPUM_1064___a 82 --AAATTTTTCAAAAATAAATTGGCGGTTGCCGGCTCCGTGA-TCTTATT 128
BSNT_01907___ 141 TATCATTATTATGTCGGCTGTTTTCGCTCCTTTAATTGCACCTTATCCCC 190
.||||||||..|.||.||..||||.||||||.|.|||||.|||||..|.|
BPUM_1064___a 129 GATCATTATCTTTTCAGCCATTTTTGCTCCTGTGATTGCCCCTTACGCAC 178
BSNT_01907___ 191 AAGAGCAGCAAAGCCTGCTTGA-TAAATATAAGGCGCCGG--GCC----- 232
.|||||||||| |.||.| |||| |.|||.||.| |||
BPUM_1064___a 179 CAGAGCAGCAA-----GATTTATTAAA---ACGGCTCCAGCCGCCAAGTG 220
BSNT_01907___ 233 TTGAACATCTGATGGGAACGGATAAATTTGGACGTGATATTTTCAGCCGG 282
..||.|||.||||||||||.||.||.|||||.||.|||||||||....||
BPUM_1064___a 221 CAGAGCATTTGATGGGAACTGACAAGTTTGGCCGAGATATTTTCTCAAGG 270
BSNT_01907___ 283 ATCCTATATGGAGCGCGTGTCTCTTTATTGGTTGGATTTGCGTCCGTAGT 332
.|.||.|||||||||.|.|||||||||||.||.||.||||..||.||.||
BPUM_1064___a 271 GTGCTTTATGGAGCGAGAGTCTCTTTATTAGTCGGTTTTGTCTCAGTGGT 320
BSNT_01907___ 333 CGGCTCGATTTTGATCGGAACGGTTTTAGGAGCATTAGCCGGATATTTCA 382
|||..|||||...||.||.||.||..|.|||||..||||.||.|||||||
BPUM_1064___a 321 CGGTGCGATTACCATTGGCACTGTGGTCGGAGCGGTAGCGGGGTATTTCA 370
BSNT_01907___ 383 GAGGAATAGTGGATGC--TGTCATTATGCGTGTAGTTGACATTGTGTTAT 430
.||||.|.||.|||.| ||| |.|||.|..|.||.||..|||||||.|
BPUM_1064___a 371 AAGGATTTGTTGATTCCTTGT--TAATGAGATTTGTGGATGTTGTGTTGT 418
BSNT_01907___ 431 CCATTCCTGATATTTTCTTGTTGATCACGCTGGTCACCATCTTCAAGCCG 480
|.||.|||||.|||||..|.||.||||||||.||||||||.|||||||||
BPUM_1064___a 419 CGATCCCTGACATTTTTCTCTTAATCACGCTCGTCACCATTTTCAAGCCG 468
BSNT_01907___ 481 GGTGTGGACAAACTGATTTTAATTTTCTG-TCTCACAGGATGGACCACAA 529
||..|.||.|||.||||||||||.|| || |.|.||.||.||||||||||
BPUM_1064___a 469 GGCATTGATAAATTGATTTTAATCTT-TGCTTTGACCGGCTGGACCACAA 517
BSNT_01907___ 530 CAGCACGATT-------AGTAAGGGGAGAATTCTTGTCGCTCCGTTCAAG 572
|.||..||.| ||| |||||.||.||..|.||..||||
BPUM_1064___a 518 CCGCGAGACTGATCCGCAGT-------GAATTTTTATCATTGCGAACAAG 560
BSNT_01907___ 573 GGAATATGTTCTTGCTGCTAAAACAATTGGAACAAAAACGCACAAAATTA 622
.||||..||.||.||.||.|.|||.||||||||.||||..||....||.|
BPUM_1064___a 561 AGAATTCGTACTCGCAGCAAGAACCATTGGAACGAAAAATCATGTCATCA 610
BSNT_01907___ 623 TTTTTTCTCATATCCTGCCCAA-TGCGTTA--GGGCCGATTATCGTGTCA 669
|.|||||.|||||..|.||.|| || || ||.||.|||||.||||||
BPUM_1064___a 611 TCTTTTCACATATTTTACCGAACTG---TATCGGTCCTATTATTGTGTCA 657
BSNT_01907___ 670 GCTACGCTGAAAGTAGGGTCTGTTATTCTAGCTGAATCGGCGCTAAGCTA 719
|||||.||.||||||||.||.||.|||.||||||||||..||||.|||||
BPUM_1064___a 658 GCTACCCTTAAAGTAGGTTCCGTCATTTTAGCTGAATCAACGCTGAGCTA 707
BSNT_01907___ 720 CTTGGGCTTTGGAATCCAGCCGCCAATCGCTAGCTGGGGGAACATGCTTC 769
..|.||.|||||.||.||||||||||.|||.||||||||.||||||||.|
BPUM_1064___a 708 TCTAGGATTTGGCATACAGCCGCCAACCGCGAGCTGGGGCAACATGCTAC 757
BSNT_01907___ 770 AAGACGCACAGAATTTCACAGTAATGATTCAAGCATGGTGGTACCCGTTA 819
||||.|||||.||||||.|..|.|||.|.|||||.||||||||.|||.|.
BPUM_1064___a 758 AAGATGCACAAAATTTCTCGATTATGGTGCAAGCGTGGTGGTATCCGCTC 807
BSNT_01907___ 820 TTTCCCGGGCTATTTATTTTAATGACCGTTTTATGCTTCAACTTTGTCGG 869
||.||.||..||.|.||.||..||||||||||||||||.|||||..|.||
BPUM_1064___a 808 TTCCCAGGTTTACTCATATTGCTGACCGTTTTATGCTTTAACTTCTTAGG 857
BSNT_01907___ 870 TGATGGCCTGCGGGATGCGCTTGATCCGAAAAATATTAAA-TAA 912
||||||.||..|.|||||.||||||||.||||| |||||| |||
BPUM_1064___a 858 TGATGGACTAAGAGATGCCCTTGATCCTAAAAA-ATTAAAGTAA 900
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