Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01903 and BPUM_1060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_01903___appD.1.24716.seq
# -bsequence dna-align/BPUM_1060___appD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01903___appD-BPUM_1060___appD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01903___appD-BPUM_1060___appD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01903___appD
# 2: BPUM_1060___appD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity: 715/1031 (69.4%)
# Similarity: 715/1031 (69.4%)
# Gaps: 94/1031 ( 9.1%)
# Score: 2412.0
#
#
#=======================================
BSNT_01903___ 1 ATGAGCACACTTTTAGAAGTGAATAATTTAAAGACATATTTTTTCAGGAA 50
||||.|||.||..|.||||||.|.||.|||||.||.||||||||..|.||
BPUM_1060___a 1 ATGACCACGCTGCTTGAAGTGCAGAACTTAAAAACCTATTTTTTTCGAAA 50
BSNT_01903___ 51 AAAGGAGCCGATCCCTGCGGTTGACGGAGTCGATTTTCA-CATCAGCAAA 99
|||.||..||||.|||||.||.|||||.||.|| ||||| |||||..|.|
BPUM_1060___a 51 AAAAGAAGCGATACCTGCTGTAGACGGCGTTGA-TTTCAGCATCAATAGA 99
BSNT_01903___ 100 GGCGAAACCGTCGCGCTTGTAGGTGAATCGGGCTCCGGAAAAAGCATTAC 149
||.|||||.|||||..|.||.|||||.||.||.||.||.|||||||||||
BPUM_1060___a 100 GGAGAAACTGTCGCATTAGTCGGTGAGTCTGGATCTGGTAAAAGCATTAC 149
BSNT_01903___ 150 TTCTTTATCAATTATGGGCCTCGTCCAAAGCTCAGGCGGAAAAATCATGG 199
.||.|||||.|||||||||.|..|..|..||.|.||.||||||||.||||
BPUM_1060___a 150 GTCCTTATCCATTATGGGCTTGATTAACGGCACTGGTGGAAAAATTATGG 199
BSNT_01903___ 200 ACGGCTCTATTAAACTCGAAGACAAAGACCTCACCTCATTCACTGAAAAC 249
||||.||.||.||.||.||.|.|||.||.|||....|||....||||||.
BPUM_1060___a 200 ACGGTTCCATCAAGCTTGATGGCAAGGATCTCGTTACATATGGTGAAAAG 249
BSNT_01903___ 250 G-ATTATTGCAAAATCCGCGGTAACGAAGTATCCATGATCTTTCAGGAAC 298
| |||| |||||.||.||.|||||.||.|||||.||||||||||||||||
BPUM_1060___a 250 GAATTA-TGCAACATTCGTGGTAATGACGTATCGATGATCTTTCAGGAAC 298
BSNT_01903___ 299 CAATGACCTCCCTTAATCCGGTGTTAACAATCGGAGAACAAATTACCGAA 348
|.||||||||.||||||||.||..||||.|||||.||||||||.||.|||
BPUM_1060___a 299 CCATGACCTCACTTAATCCCGTCCTAACCATCGGGGAACAAATAACAGAA 348
BSNT_01903___ 349 GTGCTGATTTACCATAAAAA-----CATGAAGAAAAAAGAAGCCCGTC-- 391
.|.||.||.||.||.||||| || |||||||||| ||.|
BPUM_1060___a 349 ATCCTCATCTATCACAAAAAACTTTCA-----AAAAAAGAAG--CGACGA 391
BSNT_01903___ 392 AACGAGCTGTTGAACTCTTGCAGATGGTCGGTTTCTCCCGGGCGGAGCAA 441
||..|||..||||.||..||.||.|.||.|||||.|||.|..||||.|||
BPUM_1060___a 392 AAAAAGCGATTGATCTGCTGAAGCTTGTTGGTTTTTCCAGACCGGAACAA 441
BSNT_01903___ 442 ATTATGAAGGAGTACCCGCATCGGCTGTCCGGCGGTATGAGACAGAGGGT 491
||.||.||.||.||.|||||.||..|.||.|||||.|||.|.||.||.||
BPUM_1060___a 442 ATCATCAAAGATTATCCGCACCGTTTATCAGGCGGCATGCGGCAAAGAGT 491
BSNT_01903___ 492 GATGATTGCCATCGCACTGAGCTGTAATCCTAAACTGCTCATTGCCGATG 541
||||||||||||.||.||.||.|||.||||.||.||.||||||||.||.|
BPUM_1060___a 492 GATGATTGCCATTGCGCTAAGTTGTGATCCGAAGCTTCTCATTGCAGACG 541
BSNT_01903___ 542 AACCAACGACAGCGCTGGACGTGACAATACAAGCCCAGGTGCTGGAGC-- 589
|.||.||.||.||.||.||.||.||.||.|||||||||||||| |
BPUM_1060___a 542 AGCCGACAACTGCCCTAGATGTTACGATTCAAGCCCAGGTGCT----CAC 587
BSNT_01903___ 590 --TCATGAAAGATCTCTGTCA-GAAGTTCAATACATCGATTCTTCTCATC 636
|.||||||||..|.|| || ||..||...||||||||||||.||.||.
BPUM_1060___a 588 ATTGATGAAAGACTTATG-CACGACTTTTGGTACATCGATTCTCCTAATT 636
BSNT_01903___ 637 ACACACGACTTAGGTGTCGTGTCTGAGGCTGCCGATAGAGTGATTGTCAT 686
||.||.||..|.||.|||||||||||.|..||.|||.|||||||||||||
BPUM_1060___a 637 ACCCATGATCTCGGCGTCGTGTCTGAAGTGGCAGATCGAGTGATTGTCAT 686
BSNT_01903___ 687 GTACTGCGGACAAGTCGTAGAAAACGCTACAGTTGATGACTTATTT--TT 734
|||.||||||||.||.||.|||||.|..||.||.||.||.|||||| |.
BPUM_1060___a 687 GTATTGCGGACAGGTTGTTGAAAATGGGACCGTCGAAGAATTATTTGATC 736
BSNT_01903___ 735 AGAACCGCTTCATCCGTATACAGAAGGCCTGCTTACGTCAATTCCTGTTA 784
|| |||||||||||.||.||||||||.||.|||...|||||||||||.|
BPUM_1060___a 737 AG--CCGCTTCATCCTTACACAGAAGGACTACTTGAATCAATTCCTGTCA 784
BSNT_01903___ 785 TAGATGGAGAGATTGATAAA----TTAAATGCAATTAAAGGCAGTGTGCC 830
|.||.||||| .|||.| .||...||.||.|||||.|.|||.||
BPUM_1060___a 785 TTGACGGAGA----CATACAGCCGCTAGCGGCGATAAAAGGGAATGTCCC 830
BSNT_01903___ 831 TACACCGGATAATCTGCC-GCCGGGGTGCCGTTTTGCCCCAAGGTGCCCG 879
..||||.|||.|.||.|| ||| ||.|||||.|||||.||.||.||||||
BPUM_1060___a 831 AGCACCAGATCAACTCCCAGCC-GGCTGCCGCTTTGCTCCTAGATGCCCG 879
BSNT_01903___ 880 AAAGCTATGGA---------------------TAAGTGCT--GGACAAAT 906
.|||..|.||| ||| ||| |||||
BPUM_1060___a 880 CAAGTGAAGGAGCGATGCCTAGGCGAGCTACCTAA--GCTGAGGACA--- 924
BSNT_01903___ 907 CAGCCTTCGCTTTTGACACACAAAAGCGGAAGAACGGTGAGATGCTTTTT 956
|||| |||..||.||||..||.||||||||.||
BPUM_1060___a 925 -----------TTTG-------AAAATGGCAGAAGCGTCAGATGCTTCTT 956
BSNT_01903___ 957 ATATGAGGAAGAGGGTGCCGAACAATCATGA 987
||||||||| .||.||.|||.|||||
BPUM_1060___a 957 ATATGAGGA------GGCAGACCAAACATGA 981
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