Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01903 and BPUM_1060

See Amino acid alignment / Visit BSNT_01903 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_01903___appD.1.24716.seq
#    -bsequence dna-align/BPUM_1060___appD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01903___appD-BPUM_1060___appD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01903___appD-BPUM_1060___appD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01903___appD
# 2: BPUM_1060___appD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity:     715/1031 (69.4%)
# Similarity:   715/1031 (69.4%)
# Gaps:          94/1031 ( 9.1%)
# Score: 2412.0
# 
#
#=======================================

BSNT_01903___      1 ATGAGCACACTTTTAGAAGTGAATAATTTAAAGACATATTTTTTCAGGAA     50
                     ||||.|||.||..|.||||||.|.||.|||||.||.||||||||..|.||
BPUM_1060___a      1 ATGACCACGCTGCTTGAAGTGCAGAACTTAAAAACCTATTTTTTTCGAAA     50

BSNT_01903___     51 AAAGGAGCCGATCCCTGCGGTTGACGGAGTCGATTTTCA-CATCAGCAAA     99
                     |||.||..||||.|||||.||.|||||.||.|| ||||| |||||..|.|
BPUM_1060___a     51 AAAAGAAGCGATACCTGCTGTAGACGGCGTTGA-TTTCAGCATCAATAGA     99

BSNT_01903___    100 GGCGAAACCGTCGCGCTTGTAGGTGAATCGGGCTCCGGAAAAAGCATTAC    149
                     ||.|||||.|||||..|.||.|||||.||.||.||.||.|||||||||||
BPUM_1060___a    100 GGAGAAACTGTCGCATTAGTCGGTGAGTCTGGATCTGGTAAAAGCATTAC    149

BSNT_01903___    150 TTCTTTATCAATTATGGGCCTCGTCCAAAGCTCAGGCGGAAAAATCATGG    199
                     .||.|||||.|||||||||.|..|..|..||.|.||.||||||||.||||
BPUM_1060___a    150 GTCCTTATCCATTATGGGCTTGATTAACGGCACTGGTGGAAAAATTATGG    199

BSNT_01903___    200 ACGGCTCTATTAAACTCGAAGACAAAGACCTCACCTCATTCACTGAAAAC    249
                     ||||.||.||.||.||.||.|.|||.||.|||....|||....||||||.
BPUM_1060___a    200 ACGGTTCCATCAAGCTTGATGGCAAGGATCTCGTTACATATGGTGAAAAG    249

BSNT_01903___    250 G-ATTATTGCAAAATCCGCGGTAACGAAGTATCCATGATCTTTCAGGAAC    298
                     | |||| |||||.||.||.|||||.||.|||||.||||||||||||||||
BPUM_1060___a    250 GAATTA-TGCAACATTCGTGGTAATGACGTATCGATGATCTTTCAGGAAC    298

BSNT_01903___    299 CAATGACCTCCCTTAATCCGGTGTTAACAATCGGAGAACAAATTACCGAA    348
                     |.||||||||.||||||||.||..||||.|||||.||||||||.||.|||
BPUM_1060___a    299 CCATGACCTCACTTAATCCCGTCCTAACCATCGGGGAACAAATAACAGAA    348

BSNT_01903___    349 GTGCTGATTTACCATAAAAA-----CATGAAGAAAAAAGAAGCCCGTC--    391
                     .|.||.||.||.||.|||||     ||     ||||||||||  ||.|  
BPUM_1060___a    349 ATCCTCATCTATCACAAAAAACTTTCA-----AAAAAAGAAG--CGACGA    391

BSNT_01903___    392 AACGAGCTGTTGAACTCTTGCAGATGGTCGGTTTCTCCCGGGCGGAGCAA    441
                     ||..|||..||||.||..||.||.|.||.|||||.|||.|..||||.|||
BPUM_1060___a    392 AAAAAGCGATTGATCTGCTGAAGCTTGTTGGTTTTTCCAGACCGGAACAA    441

BSNT_01903___    442 ATTATGAAGGAGTACCCGCATCGGCTGTCCGGCGGTATGAGACAGAGGGT    491
                     ||.||.||.||.||.|||||.||..|.||.|||||.|||.|.||.||.||
BPUM_1060___a    442 ATCATCAAAGATTATCCGCACCGTTTATCAGGCGGCATGCGGCAAAGAGT    491

BSNT_01903___    492 GATGATTGCCATCGCACTGAGCTGTAATCCTAAACTGCTCATTGCCGATG    541
                     ||||||||||||.||.||.||.|||.||||.||.||.||||||||.||.|
BPUM_1060___a    492 GATGATTGCCATTGCGCTAAGTTGTGATCCGAAGCTTCTCATTGCAGACG    541

BSNT_01903___    542 AACCAACGACAGCGCTGGACGTGACAATACAAGCCCAGGTGCTGGAGC--    589
                     |.||.||.||.||.||.||.||.||.||.||||||||||||||    |  
BPUM_1060___a    542 AGCCGACAACTGCCCTAGATGTTACGATTCAAGCCCAGGTGCT----CAC    587

BSNT_01903___    590 --TCATGAAAGATCTCTGTCA-GAAGTTCAATACATCGATTCTTCTCATC    636
                       |.||||||||..|.|| || ||..||...||||||||||||.||.||.
BPUM_1060___a    588 ATTGATGAAAGACTTATG-CACGACTTTTGGTACATCGATTCTCCTAATT    636

BSNT_01903___    637 ACACACGACTTAGGTGTCGTGTCTGAGGCTGCCGATAGAGTGATTGTCAT    686
                     ||.||.||..|.||.|||||||||||.|..||.|||.|||||||||||||
BPUM_1060___a    637 ACCCATGATCTCGGCGTCGTGTCTGAAGTGGCAGATCGAGTGATTGTCAT    686

BSNT_01903___    687 GTACTGCGGACAAGTCGTAGAAAACGCTACAGTTGATGACTTATTT--TT    734
                     |||.||||||||.||.||.|||||.|..||.||.||.||.||||||  |.
BPUM_1060___a    687 GTATTGCGGACAGGTTGTTGAAAATGGGACCGTCGAAGAATTATTTGATC    736

BSNT_01903___    735 AGAACCGCTTCATCCGTATACAGAAGGCCTGCTTACGTCAATTCCTGTTA    784
                     ||  |||||||||||.||.||||||||.||.|||...|||||||||||.|
BPUM_1060___a    737 AG--CCGCTTCATCCTTACACAGAAGGACTACTTGAATCAATTCCTGTCA    784

BSNT_01903___    785 TAGATGGAGAGATTGATAAA----TTAAATGCAATTAAAGGCAGTGTGCC    830
                     |.||.|||||    .|||.|    .||...||.||.|||||.|.|||.||
BPUM_1060___a    785 TTGACGGAGA----CATACAGCCGCTAGCGGCGATAAAAGGGAATGTCCC    830

BSNT_01903___    831 TACACCGGATAATCTGCC-GCCGGGGTGCCGTTTTGCCCCAAGGTGCCCG    879
                     ..||||.|||.|.||.|| ||| ||.|||||.|||||.||.||.||||||
BPUM_1060___a    831 AGCACCAGATCAACTCCCAGCC-GGCTGCCGCTTTGCTCCTAGATGCCCG    879

BSNT_01903___    880 AAAGCTATGGA---------------------TAAGTGCT--GGACAAAT    906
                     .|||..|.|||                     |||  |||  |||||   
BPUM_1060___a    880 CAAGTGAAGGAGCGATGCCTAGGCGAGCTACCTAA--GCTGAGGACA---    924

BSNT_01903___    907 CAGCCTTCGCTTTTGACACACAAAAGCGGAAGAACGGTGAGATGCTTTTT    956
                                ||||       |||..||.||||..||.||||||||.||
BPUM_1060___a    925 -----------TTTG-------AAAATGGCAGAAGCGTCAGATGCTTCTT    956

BSNT_01903___    957 ATATGAGGAAGAGGGTGCCGAACAATCATGA    987
                     |||||||||      .||.||.|||.|||||
BPUM_1060___a    957 ATATGAGGA------GGCAGACCAAACATGA    981


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