Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01897 and BPUM_1056

See Amino acid alignment / Visit BSNT_01897 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_01897___yjzB.1.24716.seq
#    -bsequence dna-align/BPUM_1056.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01897___yjzB-BPUM_1056.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01897___yjzB-BPUM_1056.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01897___yjzB
# 2: BPUM_1056
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     148/256 (57.8%)
# Similarity:   148/256 (57.8%)
# Gaps:          56/256 (21.9%)
# Score: 362.5
# 
#
#=======================================

BSNT_01897___      1 -TTG--------GATGTGTTTTCAAGAATGATGTTCGGCGATGCAGC---     38
                      |.|        |||.|.|||||....||||||||.||..| ||.||   
BPUM_1056          1 ATGGCGCAAAAAGATATTTTTTCGGCGATGATGTTTGGTCA-GCCGCTTG     49

BSNT_01897___     39 --------AAAACCA--ACAGAAGAGAAGGAGGAACAGCAAGAGGAGGTT     78
                             ||||.||  ||||||...|||||||||| ||     |.||  
BPUM_1056         50 AAAAGGAGAAAAGCAAGACAGAAACAAAGGAGGAAC-GC-----GTGG--     91

BSNT_01897___     79 TCTCAGACAAACGACGAA---AAGA--CGATTAATTACATGCATATTATG    123
                         |||| |||..| ||   ||||  |.|||.|.|||||||||.|.|||
BPUM_1056         92 ----AGAC-AACTTC-AAGTGAAGACTCCATTGACTACATGCATGTCATG    135

BSNT_01897___    124 GACCAAATCGGTTCAATTATGAACTCTCTTGATCAAATCAAGCCCG-CTT    172
                     .|.|||||.||....|||||||||||..|.|||.|..|.|||||.| .||
BPUM_1056        136 AATCAAATTGGGAACATTATGAACTCCATCGATGAGCTGAAGCCTGTGTT    185

BSNT_01897___    173 TAAAGGAGCTTGCACCCATGCTCTCCGCTA-----TTAAAAAGAAAATCA    217
                     |||| ||..|||..||.|||.|      ||     ||.||.|.|||||.|
BPUM_1056        186 TAAA-GATGTTGGCCCTATGAT------TAGTGCCTTCAAGAAAAAATTA    228

BSNT_01897___    218 TGTGA-    222
                     |...| 
BPUM_1056        229 TCATAA    234


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