Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01894 and BPUM_1054
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_01894___med.1.24716.seq
# -bsequence dna-align/BPUM_1054___med.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01894___med-BPUM_1054___med.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01894___med-BPUM_1054___med.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01894___med
# 2: BPUM_1054___med
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1037
# Identity: 670/1037 (64.6%)
# Similarity: 670/1037 (64.6%)
# Gaps: 157/1037 (15.1%)
# Score: 1994.5
#
#
#=======================================
BSNT_01894___ 1 TTG----ATCA-CAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTG 45
.|| |||| | |||||||||||||||||||..||||.||..||||.
BPUM_1054___m 1 ATGAAGTATCAGC--GGCTTGTCATGATCTTTTCGTTCCTTCTCCTATTA 48
BSNT_01894___ 46 AGTGGATGTGGAAAAACTCCGTTCAAAGGAAAAATTGAGAAGGTCGGCAT 95
..||..||...|.|..|.||.||.||||||.|.|||||||||||.||..|
BPUM_1054___m 49 TCTGCCTGCTCACAGGCACCTTTAAAAGGACAGATTGAGAAGGTGGGTTT 98
BSNT_01894___ 96 GCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATA 145
.|||.|.||.|||||.||||||||.|..||.|||||.||.|||||.||||
BPUM_1054___m 99 ACTCGTCCCCGATACAATTAATGATCAAGTTTGGGGAACGAAAGGTTATA 148
BSNT_01894___ 146 AAGGATTACTGAATATACAATCCAAATACAATGTGGACGTCTATTATAAA 195
||||.|||.|.|||||.|||||.|.||....|||.||.||.||||||||.
BPUM_1054___m 149 AAGGCTTATTAAATATTCAATCGACATTTGGTGTAGATGTTTATTATAAG 198
BSNT_01894___ 196 GAAGGCGTTAAA------ACAGAAGAAGATATCATAAATGCGATTGAGGA 239
||||| || ||| ||||..|.|||.|..||||.|||||.||
BPUM_1054___m 199 GAAGG-----AATGGTCGACA-AAGAGAAAATCGTTGATGCCATTGAAGA 242
BSNT_01894___ 240 TTTTCATAAGAGGGGCGTCAATCTGCTCTA-CGGCCATGGGAGTGAATA- 287
.|||||.||.|..||.||||||.||.| || .||||||||.||||||||
BPUM_1054___m 243 ATTTCACAAAAAAGGAGTCAATTTGAT-TATTGGCCATGGCAGTGAATAC 291
BSNT_01894___ 288 TGCTGAGGTGTTTAACTTGGTCGGCGAAGATTATCCAGATATGGAATTCG 337
.|| ||..|.||.|||||..|..|.||||||||||| |||..|.
BPUM_1054___m 292 AGC-GAAATTTTCAACTTAATTAGTGAAGATTATCC-------GAAAACA 333
BSNT_01894___ 338 TCATTTCCAATGCG--AAAGCGAAA----------GCTGATAATGTAACG 375
..|||| |.|.|| |||..|||| ||.||||||||..||
BPUM_1054___m 334 CAATTT--ATTACGGTAAATGGAAACAAGCCTCAGGCGGATAATGTTGCG 381
BSNT_01894___ 376 AGTGT-CCATTTTAGCGGGGAAGCAATGGGCTTTTTTGGAGGAATGACTG 424
|.||| .|| ||||..||.|||||.|||||||||||||||||.|||||.|
BPUM_1054___m 382 AATGTGACA-TTTAAAGGTGAAGCGATGGGCTTTTTTGGAGGCATGACAG 430
BSNT_01894___ 425 CTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACG 474
|.||.||||||||.|||||.||..||.|.|||.|..|||||.|.|.|...
BPUM_1054___m 431 CAGCACATATGTCAAAAACAAAAAAGATTGGTATTCTTGCTACATATGAT 480
BSNT_01894___ 475 TGGC--AGCCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAAT 522
|||| ||| ||.||.|||||.|||||||||||.||.||.|||.||.||
BPUM_1054___m 481 TGGCAAAGC--GAAGTAGACGGCTTTATCAAAGGTGCAAAATATCAAGAT 528
BSNT_01894___ 523 CCGGATATA------------GAG---GTAAATACGAAATATACGGATCA 557
....||.|| ||| || ||||| |
BPUM_1054___m 529 GAACATGTACAAGTGCTTGCCGAGTTTGT-----CGAAA----------A 563
BSNT_01894___ 558 TTGGGATGATG-ATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAAC 606
.|||||||||| ..|||| |||.||..||||.|||||.|||.||||.||.
BPUM_1054___m 564 CTGGGATGATGCGGACAA-AGCCGTGGAGCTCTATCAAAAATTGAAAAAA 612
BSNT_01894___ 607 GAAGGCGCGGATGTTGTGTATCCCGCCGGAGACGGGTATAATGTCCCTGT 656
.|.||||..||||||||.|||||.||.||.||.||.||||||.|||||||
BPUM_1054___m 613 CAGGGCGTAGATGTTGTATATCCAGCAGGTGATGGTTATAATATCCCTGT 662
BSNT_01894___ 657 TATTCAGCAAATCAAAAAAGACGGT-CTTTAT--GCCATTGGCTACGTCA 703
.|||.|.|||||| ||||.||.| .||||| ||.||.||.||.||||
BPUM_1054___m 663 CATTGAACAAATC---AAAGCCGATAATTTATCAGCGATCGGATATGTCA 709
BSNT_01894___ 704 CAGATCAATCGGATCTGGGCGAG-AATACCGTATTAACCAGCACGGTGCA 752
|.||||||||..|.||.|| .|| .|||||||.|||||.|||||.||.||
BPUM_1054___m 710 CCGATCAATCCAACCTCGG-TAGCCATACCGTCTTAACAAGCACCGTTCA 758
BSNT_01894___ 753 AAATGTGGACAAGGCCTATGAAATCATTGCTGAA-CAATTTAATAAAGGC 801
..|||||||.||.||.||....||.||||| ||| .||||||||.|||||
BPUM_1054___m 759 GCATGTGGATAAAGCGTACAGTATTATTGC-GAAGAAATTTAATGAAGGC 807
BSNT_01894___ 802 ACCCT---TG----AGGGCGGCGATCATTACTAC---GACCT----GAAT 837
|..|| || ||| |.|.||||.| |||.| |||
BPUM_1054___m 808 AAGCTAAATGAACAAGG-------TGAGTACTCCTTTGACTTTAAAGAA- 849
BSNT_01894___ 838 ACGGGAGTCGTTGAGATGGGAACATTCAG-CCCGCTCGTCGAC------- 879
|||||..|.||.|||||.|.|||.|| .||.| |.|.|||
BPUM_1054___m 850 ---GGAGTGATCGAAATGGGGAAATTTAGTTCCAC-CATTGACCGTGCTT 895
BSNT_01894___ 880 -----AAAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAA-----ACAT 919
||||||.||.| ||| |||| | ||.|
BPUM_1054___m 896 TTTTGAAAGACATTGA-------------AAG-TGAT---ATTGCGACTT 928
BSNT_01894___ 920 ACAACAAAACAGGCGAGCTGCCAAA--AAACGAGTAA 954
|.||.|||||.|||.|.|||||||| ||| |||.|
BPUM_1054___m 929 ATAAAAAAACTGGCAAACTGCCAAATGAAA--AGTGA 963
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