Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01892 and BPUM_1053
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_01892.1.24716.seq
# -bsequence dna-align/BPUM_1053___yjaV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01892-BPUM_1053___yjaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01892-BPUM_1053___yjaV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01892
# 2: BPUM_1053___yjaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity: 346/679 (51.0%)
# Similarity: 346/679 (51.0%)
# Gaps: 224/679 (33.0%)
# Score: 843.0
#
#
#=======================================
BSNT_01892 1 ATGGAATCAACGCTGATTG----TAGGTGCGGACGAATTTTTCGGCCTTT 46
|||||..|| .||||| ||||.||.||.||||||||.|||||..
BPUM_1053___y 1 ATGGAGACA----GGATTGATCATAGGGGCAGATGAATTTTTTGGCCTAG 46
BSNT_01892 47 CATTATGTGAACGAATGATGGATGAAGGCATACATGTTGACGT----TGT 92
|..|.||||||...||||||.|.||.|||||.||.||.||..| |||
BPUM_1053___y 47 CGCTGTGTGAATATATGATGAAAGAGGGCATGCACGTGGATATCACATGT 96
BSNT_01892 93 TCTGGC----GGAAACAGAAGATAAAATGAGACAAATGTACTTAGAAGAA 138
.|| | ..|||||.||||..||| ||||||..|||||||||
BPUM_1053___y 97 CCT--CATCACCAAACAAAAGAGCAAA------AAATGTTATTAGAAGAA 138
BSNT_01892 139 AGACTCATGTGGCTTGGGAGAAATGAACTCTTTCG---------CCAGCT 179
.||.|.||||||||.||.||||||||.||.||.|| ||.||.
BPUM_1053___y 139 CGAATGATGTGGCTCGGCAGAAATGATCTTTTCCGTGTCATTGACCTGCA 188
BSNT_01892 180 TGAACACATTGG---AGACCAAAATTATGATACAATTTGTATCCAGTTCG 226
.|| ||| |||| |..||||||...||.|.|||.|| .||.
BPUM_1053___y 189 GGA------TGGGAAAGAC---ACGTATGATCTGATCTTTATTCA-ATCA 228
BSNT_01892 227 GAAGTTTTTTGCCTTTAGACCAATGTGATTCTCCTTATATTTTAGTATAT 276
|||| .|||| || ||.|.
BPUM_1053___y 229 GAAG-------------AACCA----GA-----------------TAAAA 244
BSNT_01892 277 G--AAGAAGACCGAAAA-----GAATGGGAAAAAC----------GTGAA 309
| |.||||.|...||| |.||||.|.|.|| .||||
BPUM_1053___y 245 GGCAGGAAGGCTTGAAAGCGGCGCATGGCATATACCGTGTTCTTTATGAA 294
BSNT_01892 310 AAAAC---AGGCTCGGAAAAAACCGTGATCC----------TGCCGAAA- 345
||||| || |.||| |.|||| |||||..|
BPUM_1053___y 295 AAAACTAAAG-------ATAAA---TCATCCAATCAGAATGTGCCGGTAG 334
BSNT_01892 346 --------------ATGTATGGGCCATGG---------AAAGAAGAAACA 372
||||.|||.|||||| ||||||..|||.
BPUM_1053___y 335 TTATTCTACCTCGCATGTTTGGACCATGGACAATTGATAAAGAAAGAACG 384
BSNT_01892 373 GAG---GAAGACGGCTATTACACAAACGACGTGGCTGACGA-GTTGC-TG 417
.|| |||||.|..|.|| |.|..||.|| ||||| .|
BPUM_1053___y 385 AAGCGTGAAGAAGCATTTT------------TTGTAGAAGATGTTGCAAG 422
BSNT_01892 418 AGATTCCTGTT------------------AGAACCAAGCCGTCATAGCAA 449
.|||| |||| .||||.||| |.||.||
BPUM_1053___y 423 GGATT--TGTTCAACTGGGCATCAGGCGCTGAACAAAG-----ACAGGAA 465
BSNT_01892 450 AGATCAGCTTTTTGAATTGCA-------AGTCACAGAGA----AAACCTC 488
|.|.|| ..|||||||.| ||.||.|.||| ||||
BPUM_1053___y 466 ATAACA----CATGAATTGAAGGTGGAGAGACAAACAGATGACAAAC--- 508
BSNT_01892 489 AAAAGAAGAAGCAAAAACAAAAATTAT---CGAGTGGAAAAGACAATTTT 535
|||.||||| ||||.|| .||.||||||||||||...|
BPUM_1053___y 509 --AAGCAGAAG---------AAATGATAGCAGAATGGAAAAGACAAAACT 547
BSNT_01892 536 CATCAATTTTCGACAAATATTAA------ 558
||.||.|||||||||||.|..||
BPUM_1053___y 548 CAACATTTTTCGACAAAAAGCAAGAATGA 576
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