Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01890 and BPUM_1052
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_01890___yjaU.1.24716.seq
# -bsequence dna-align/BPUM_1052___yjaU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01890___yjaU-BPUM_1052___yjaU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01890___yjaU-BPUM_1052___yjaU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01890___yjaU
# 2: BPUM_1052___yjaU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity: 484/808 (59.9%)
# Similarity: 484/808 (59.9%)
# Gaps: 140/808 (17.3%)
# Score: 1263.0
#
#
#=======================================
BSNT_01890___ 1 ATGGGAATAACGGAAAGATACTTTCAACTGGGAACGGAGCATAATGTCAT 50
|||||..|||..|||.|.|..||.||.||.||..|..||...||.|||||
BPUM_1052___y 1 ATGGGTGTAAGCGAACGGTTTTTCCAGCTTGGTTCCCAGTGGAACGTCAT 50
BSNT_01890___ 51 TCATCTGCCCTATCGCCCGAACGGCTTCGGCATCTTTATCTTGGGGGACA 100
|||.||.||..|....||.||.|||||.|||||..|||||.|.||.|||.
BPUM_1052___y 51 TCACCTTCCTCAAAAACCAAATGGCTTTGGCATTCTTATCCTCGGTGACC 100
BSNT_01890___ 101 GAACCCACTTTGT--CGG-----ACATGATTCAAGCTTTTGGCAGCAGCA 143
|||..|||||||| .|| ||||.|||| ||||..|||||
BPUM_1052___y 101 GAAATCACTTTGTGCAGGAAAATACATCATTC-------TGGCTTCAGCA 143
BSNT_01890___ 144 TTATGGCAGAAATCAGCTTCTGA--GCATGTTGAGGAATGAAGGATACAC 191
.|||||.|||||.||||||.|.| || .||.|.|.||||||||||.||
BPUM_1052___y 144 CTATGGAAGAAACCAGCTTTTAACTGC--CTTAAAGGATGAAGGATATAC 191
BSNT_01890___ 192 TCTTTTTAACAGCAATCTGTTC---GGAAGGCATTGGGG-GGCGGAAAAA 237
..|.|||||.||..||| ||| |||| .||.||||| .|| |||.|.
BPUM_1052___y 192 ATTGTTTAATAGTCATC--TTCATGGGAA-TCACTGGGGATGC-GAAGAT 237
BSNT_01890___ 238 GCAGTCACCT----ATGCCAAACAGC-------TGATACATTCTGTGCTG 276
||.|| | .|||.||.|||| |.|.|||| |.
BPUM_1052___y 238 GCTGT----TTTTAGTGCAAAGCAGCTCGTTCATCACACAT-------TA 276
BSNT_01890___ 277 AAGCAGGAAATCCTCAATCCGAAGATTCATATTTTAGCAGAAGGCATGGG 326
||.||.|||||..|.||.|.|.|.||||||.|..|||||||.||.|||||
BPUM_1052___y 277 AAACAAGAAATATTAAACCGGGAAATTCATGTGCTAGCAGAGGGGATGGG 326
BSNT_01890___ 327 TGCTCTCGTGGCCGATGAACTGCTTCGTTTTTCCCCGGATCATATCC--- 373
|||.|||||.| |.||||.| ||| .||||..|.||.|
BPUM_1052___y 327 TGCACTCGTTG-CTATGAGC--CTT---------GCGGAAGAGATGCCAG 364
BSNT_01890___ 374 ----GCTCAG-------CCGCAATGTTGAATCCTTGTCTCGATCTTCAGG 412
|||.|| .||| |..|||||||.|||||..||||.||.|
BPUM_1052___y 365 AAGTGCTAAGATCTATTGCGC--TCGTGAATCCATGTCTGCATCTCCATG 412
BSNT_01890___ 413 CACATTATGAATCGGAAAAAGAAAATAAATTTTTCTATAAGCAATTTTTG 462
||||....|||...|||||.|||.|.|||||.||.|||||.||..|..|.
BPUM_1052___y 413 CACAACGAGAAAGAGAAAAGGAACACAAATTCTTTTATAAACAGCTCATC 462
BSNT_01890___ 463 AAAGAAGTTTCGAAAAGCTACGGAATT--TCTGAAAAAGAAGCGGAAGCG 510
||||||.|..||||.||||||| |.| ||.|||||.|||||||||.||
BPUM_1052___y 463 AAAGAATTAGCGAAGAGCTACG--ACTGCTCCGAAAAGGAAGCGGAAACG 510
BSNT_01890___ 511 CTTCGTTATAAAACAATTCAAAGCT--ACCCGA----GCGGC----GTAC 550
||| |...||..|||| .|||.| .|.|| ||||
BPUM_1052___y 511 ------TAT----CCGCTCCCAGCTTGCCCCTATCATTCTGCTCATGTAC 550
BSNT_01890___ 551 CGGTTCATATATGGCAGCGTATGAC----CGGAGCTCCATATCCCT---- 592
|..||||.|||||||| |.||| |||.||.||.|||.|.|
BPUM_1052___y 551 CAATTCACATATGGCA----AAGACTAAACGGTGCACCTTATGCATATGA 596
BSNT_01890___ 593 ACAGCGTACATGCGGAAG--TTTTCAAGGAAAAACAGCAAA--------- 631
||.||.|.|| ||| ||||...| |.|||||.|
BPUM_1052___y 597 ACTGCATGCA-----AAGCCTTTTATTG----ACCAGCACATGAAGAATC 637
BSNT_01890___ 632 ---AGCAAGGCTCACCGGTCGACATGACATTTCATTTATTTGAGCATCCA 678
||||..| ||| |.||||..|.||.||.|||.|.|||||.|||||.
BPUM_1052___y 638 CGGAGCATTG-TCA--GATCGATCTCACCTTGCATATGTTTGATCATCCG 684
BSNT_01890___ 679 AGCAGAATTTATGCATCAATTTGCAAATTCTTTCACAGTCATGAAAAAGA 728
||.|||||.|.|..|||.|||..|||.||.|.|.|....|||||||.|||
BPUM_1052___y 685 AGAAGAATCTTTCAATCCATTCACAAGTTTTATAAATCGCATGAAAGAGA 734
BSNT_01890___ 729 ATTATAG- 735
|||.| |
BPUM_1052___y 735 ATTGT-GA 741
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