Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01882 and BPUM_1045
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_01882___argD.1.24716.seq
# -bsequence dna-align/BPUM_1045___argD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01882___argD-BPUM_1045___argD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01882___argD-BPUM_1045___argD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01882___argD
# 2: BPUM_1045___argD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity: 812/1223 (66.4%)
# Similarity: 812/1223 (66.4%)
# Gaps: 136/1223 (11.1%)
# Score: 2478.0
#
#
#=======================================
BSNT_01882___ 1 ATGAG-CAGCTTGTTTCAAACCTACGGCCGTTGGGATATTGACCTCAAAA 49
.|||| ||.| |.||||||||.||.||.||.|||.||.||||..|.|||.
BPUM_1045___a 1 GTGAGTCATC-TCTTTCAAACATATGGACGGTGGAATGTTGAAATTAAAG 49
BSNT_01882___ 50 AAGCAAAGGGAACGTACGTTGAG-----GATCAAAACGGCAAATCATACC 94
|.||| |.|.||.| |||.| |||..|||.||.|||..|||..
BPUM_1045___a 50 AGGCA----GCAGGTTC-TTGGGCAGTCGATACAAATGGGAAAAAATATT 94
BSNT_01882___ 95 TTGATTTCATTCAGGGGATTGCGGTATCAAATCTAGGACACTGCCATGAA 144
|.||.||.||.||.||.||.||.||..|||||||.||.||| ||
BPUM_1045___a 95 TAGACTTTATCCAAGGCATAGCAGTCACAAATCTCGGTCAC-------AA 137
BSNT_01882___ 145 GC-------GGTGA--CAGAGGCAGTCAAAAAACAGCTTGA-CAGCGTAT 184
.| |||.| || ||.|| ||||.||||||||||| || .||||
BPUM_1045___a 138 TCACCCAAAGGTCAATCA-AGCCA-TCAAGAAACAGCTTGATCA-TGTAT 184
BSNT_01882___ 185 GGCACGTATCTAACCTGTTTCAAAACAGTCTCCAAGAGCAAGCGGCGCAG 234
||||.|||||.||..|.|||.||||..|.||.|||||..||||.||..|.
BPUM_1045___a 185 GGCATGTATCGAATTTATTTGAAAATGGACTGCAAGAAAAAGCAGCAGAA 234
BSNT_01882___ 235 AAGCTGGCAGCGCATAGTGCAGGAGATCTTGTCTTTTTCTGCAACAGCGG 284
||.|||||.||..|.|||.||||.|||||.||.||||||||.||.|||||
BPUM_1045___a 235 AAACTGGCTGCAAACAGTTCAGGGGATCTCGTGTTTTTCTGTAATAGCGG 284
BSNT_01882___ 285 CGCAGAGGCGAATGAAGGTGCGATAAAGCTTGCCCGAAAAGCAACTGGAA 334
.||.|||||.||||||||||||||.||..|.||.||.||||||||.||||
BPUM_1045___a 285 AGCTGAGGCAAATGAAGGTGCGATCAAATTAGCACGTAAAGCAACAGGAA 334
BSNT_01882___ 335 AAACAAAAATCATCACTTTTCTTCAGTCGTTCCATGGCCGCACGTATGCA 384
|||||||.|||.|.||.|||.|.||.||.||.|||||.|||||||||||.
BPUM_1045___a 335 AAACAAATATCGTGACATTTTTGCACTCTTTTCATGGGCGCACGTATGCT 384
BSNT_01882___ 385 GGGATGGCTGCGACCGGACAGGATAAAATCAAAACAGGCTTCGGCCCGAT 434
||.||||||||.||.||.||.||||||||.|||||.||.||.||.||.||
BPUM_1045___a 385 GGTATGGCTGCTACAGGTCAAGATAAAATTAAAACGGGTTTTGGTCCTAT 434
BSNT_01882___ 435 GCTTGAAGGCTTTCACTACCTGCCATACAATGATCCTTCTGCTTTTA-AA 483
|||.|||||||||||.||..|.||.|.||||||||| | ||
BPUM_1045___a 435 GCTGGAAGGCTTTCATTATGTACCGTTCAATGATCC----------AGAA 474
BSNT_01882___ 484 GCTCTTG------GGGAGGAAGGCGATATTGCCGCGGTGATGCTTGAAAC 527
||..||| |.||.|..||..||.|.||.|||||||||||.|||..
BPUM_1045___a 475 GCGATTGCCGCATGTGAAGTCGGTAATGTGGCAGCGGTGATGCTCGAAGT 524
BSNT_01882___ 528 AGTGCAGGGAGAAGGAGGAGTCAATCCGGCGAGTGCTGAATTTTTATCAG 577
.||||||||||||||.||.||||||||.||.|...|.||||||.||..||
BPUM_1045___a 525 TGTGCAGGGAGAAGGTGGCGTCAATCCAGCAACAACAGAATTTCTAGAAG 574
BSNT_01882___ 578 CCGTACAGTCGTTTTGCAAGGAAAAGC---AAGCCCTTCTCATCATTGAT 624
||||.||..|||||||| .|||||| ||||.||.||.|||.|.|||
BPUM_1045___a 575 CCGTTCAAGCGTTTTGC---CAAAAGCATGAAGCACTGCTGATCGTAGAT 621
BSNT_01882___ 625 GAAATCCAGACCGGCATCGGACGGACGGGAAAAGGCTTCGCATATGAGCA 674
||.||.||.||.||.||.|||||.||.||||.||..||.|||||.||.||
BPUM_1045___a 622 GAGATTCAAACGGGTATAGGACGTACAGGAACAGCATTTGCATACGAACA 671
BSNT_01882___ 675 CTTCGGACTCTCA-CCGGATATCATCACAGTC-GCCAAAGGATTGGGAAA 722
....||||| |.| ||.|||||.|||.| .|| ||.||||||||.|||||
BPUM_1045___a 672 AACGGGACT-TGATCCTGATATTATCTC-TTCTGCAAAAGGATTAGGAAA 719
BSNT_01882___ 723 CGGCTTTCCGGTCGGCGCTGTCATTGGAAAAAAACAGC--TTGGAGAAGC 770
.|||||.||.||.||.||.|||||.||.||||| .|| |.|||||.||
BPUM_1045___a 720 TGGCTTCCCAGTTGGTGCAGTCATCGGGAAAAA--GGCATTAGGAGACGC 767
BSNT_01882___ 771 GTTTACCCCTGGTTCTCACGGAACGACTTTCGGAGGAAATATGCTGGCGA 820
.||..|.||.|||||.||||||||.||.|||||.||.||.|||||.||.|
BPUM_1045___a 768 ATTCTCACCAGGTTCACACGGAACAACCTTCGGTGGTAACATGCTTGCCA 817
BSNT_01882___ 821 TGGCTGCTGTGAATGCCACATTGCAAATTG-TATTCCAGCCTGACTTTTT 869
||||.||.||||||||.|||.| |.|..|| |.|||.|...|||.|||.|
BPUM_1045___a 818 TGGCCGCAGTGAATGCAACACT-CGATGTGATTTTCAAAGATGAGTTTCT 866
BSNT_01882___ 870 GCAAGAGGCTG-CTGATAAAGGGGCGTTTTTAAAAGAACAGCTTGAGGC- 917
|..|||.| || ..||.|||||.||.|.|.||..||||.|||| ||
BPUM_1045___a 867 GACAGAAG-TGAAAGAAAAAGGCGCTTATCTACTAGAAAAGCT----GCA 911
BSNT_01882___ 918 GGAGCTAAA------GAGCCCTTTTGTTAAACAAATCCGAGGTAAAGGAT 961
.||.||||| || .|.|.||.|||.||.|.||.||.|||||||
BPUM_1045___a 912 AGATCTAAAACAACTGA---ATATCGTAAAAGAAGTACGCGGAAAAGGAT 958
BSNT_01882___ 962 TAATGCTTGGAATTGAGTGTGATGGCCCGGTTGCTGACATTATTGCTGAA 1011
|.|||...||..||||.|||.||...||.|| |.|..||||| |
BPUM_1045___a 959 TGATGGCAGGGGTTGAATGTCATCAGCCAGT--CGGGGATTAT------A 1000
BSNT_01882___ 1012 TTGCAG----------ACATTAGGCTTGCTTGTATTGCCGGCCGGCCCGA 1051
|..||| ||| |||.|||||.|||.|.||.||.||.||.|
BPUM_1045___a 1001 TCACAGCCCTAAGAGAACA--AGGATTGCTAGTACTTCCAGCTGGTCCAA 1048
BSNT_01882___ 1052 ACGTGATTCGGCTGCTGCCGCCGCTCACCGT-GACTAAGGATGAAATAGC 1100
|.|||||||||.|..||||.|||||.|..|| ||..|||.| |||||||
BPUM_1045___a 1049 ATGTGATTCGGTTATTGCCTCCGCTGAATGTAGAAAAAGCA-GAAATAG- 1096
BSNT_01882___ 1101 AGAAGCCGTCAGCAAGCTGAAACAGGCAATCGCTCA-TCA---TTCCGC- 1145
|.||||| ||.|.|.| ||||.| ||| ||..||
BPUM_1045___a 1097 ----------ATCAAGC-GATAGATG----CGCTAACTCAGGTTTTAGCA 1131
BSNT_01882___ 1146 --TGTAAACCAGTGA-------- 1158
|| ||.||||||
BPUM_1045___a 1132 AATG--AAACAGTGACGGTATAA 1152
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