Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01879 and BPUM_1042
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_01879___argC.1.24716.seq
# -bsequence dna-align/BPUM_1042___argC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01879___argC-BPUM_1042___argC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01879___argC-BPUM_1042___argC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01879___argC
# 2: BPUM_1042___argC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity: 738/1109 (66.5%)
# Similarity: 738/1109 (66.5%)
# Gaps: 136/1109 (12.3%)
# Score: 2305.0
#
#
#=======================================
BSNT_01879___ 1 ------TTGAAAATAGGAATTGTAGGTGCTACAGGATATGGAGGCACCGA 44
|||||||||||.|||.||||||||||||||||.||.||..|.||
BPUM_1042___a 1 TTGACGTTGAAAATAGGTATTATAGGTGCTACAGGATACGGTGGAGCGGA 50
BSNT_01879___ 45 ACTTGTCAGGATTCTTTC--GCATCATCCTCATGCAGAGGAATGCATACT 92
|.|.||..|.|| .||| |||.|||||.||||..||||||||.|||.|
BPUM_1042___a 51 ATTAGTTCGTAT--CTTCAAGCAACATCCACATGTGGAGGAATGTATATT 98
BSNT_01879___ 93 TTATTCATCCAGCGGAGAAGGG-AATGTCTATAGCGAGGGTTATCCTCAT 141
.||||||||.||.||.||.||| ||| |.||.||..|...||||||.|||
BPUM_1042___a 99 GTATTCATCGAGTGGTGATGGGCAAT-TATACAGTCAATCTTATCCGCAT 147
BSNT_01879___ 142 CTTAC--CGGCTTAGCGGATC-AGCAGCTGAAGCCGATTGAT-------- 180
||.|| | |.||| |.|||| |.||....||||| ||||||
BPUM_1042___a 148 CTAACAAC-GATTA-CTGATCAAACATTAAAAGCC-ATTGATCCTGCTGC 194
BSNT_01879___ 181 --ATGAATACGATCAAACACGAAATAGATATCATGTTTCTCGCTGCGCCG 228
.|| |.||| ||||.||||....|||||.|.||..|.||.
BPUM_1042___a 195 CATTG--TGCGA--------GAAACAGATGCTGTGTTTTTAGCGACACCA 234
BSNT_01879___ 229 CCCGGAGTATCAAGTGAATTGACTCCAAAGCTGGCAGACGCGGGAATTCC 278
.|.||.||||||||||||.|.||.||.|||||.....||...|||.|.||
BPUM_1042___a 235 GCAGGCGTATCAAGTGAACTCACACCGAAGCTTATGAACCAAGGAGTGCC 284
BSNT_01879___ 279 GGTTATTGATCTGTCAGGTGATCTGAGGATACAAGAACCGGCTGAA---T 325
..|.||||||.|.|||||||||.||.|.||.||||| ||| ||.| |
BPUM_1042___a 285 TATCATTGATTTATCAGGTGATTTGCGCATTCAAGA--CGG-TGCAACCT 331
BSNT_01879___ 326 ATGAAAAATGGTATAAAC---GGACAGCGG------CACCGAAGGCGGTG 366
|||||...|||||||||| ||.||||.| ||.| ||
BPUM_1042___a 332 ATGAAGCTTGGTATAAACGAAGGGCAGCTGATCAATCATC--------TG 373
BSNT_01879___ 367 ATTCAAGAGGCGGTATACGGTCTGGCAGAACTGAATCAACTGCAA--ATT 414
|||||.|.||.||.||.||..|..|.|||.|||||| .||.|| |||
BPUM_1042___a 374 -TTCAACAAGCTGTGTATGGGTTATCGGAATTGAATC--GTGAAACGATT 420
BSNT_01879___ 415 CAACAGGCGAAACTCATTGCCAATCCAGGCTGTTTTCCAACAGCTGTTTT 464
.|..|||||.||.|||||||.||.|||||.||.||.||.||.||.|||.|
BPUM_1042___a 421 GAGAAGGCGGAAGTCATTGCAAACCCAGGGTGCTTCCCTACGGCAGTTCT 470
BSNT_01879___ 465 GCTTGGCCTCGCGCCATTGGCTCAAA-AGAAACTGCTCGATGAATCTTTC 513
.||.|||.|.||.|||.| |.|.||| ||||.||..|||||||||||.|.
BPUM_1042___a 471 TCTCGGCTTAGCACCACT-GATGAAACAGAATCTAATCGATGAATCTATG 519
BSNT_01879___ 514 GTTATCGTTGACGCGAAGACGGGTGTTTCCGGAGCGGGAAGAAAAGCATC 563
.|.|||.|.||.||.||.||.||.||.|||||.||.|||.||...||.||
BPUM_1042___a 520 ATCATCATAGATGCAAAAACAGGAGTGTCCGGTGCAGGACGATCCGCCTC 569
BSNT_01879___ 564 CATGGGAACCCATTTTTCTGAGCTGAACGGCAATTTTAAAATTTATAAAG 613
..|.|||||.||||||||.|||||.||||.|||.||.|||||||||||.|
BPUM_1042___a 570 ACTTGGAACGCATTTTTCAGAGCTAAACGACAACTTCAAAATTTATAAGG 619
BSNT_01879___ 614 TCAATGAACATCAGCACACGCCGGAAATTGAGCAGGCGCTGAAT------ 657
|.|||||||||||.||.||.||.|||||.||||| |||
BPUM_1042___a 620 TAAATGAACATCAACATACACCTGAAATAGAGCA-------AATATTAAG 662
BSNT_01879___ 658 -GAATGGCAGCCA-----GGCCTCGGGCCCATTACATTTTCGGCTCACTT 701
||||||.|.||| ||| |..|||.||||||||..|.|||.|
BPUM_1042___a 663 AGAATGGAATCCACAAACGGC-----GAACATCACATTTTCAACACACCT 707
BSNT_01879___ 702 GGTTCCGATGACAAGGGGCATCATGGCGACGATGTATAC-CAGATTAACC 750
.||.||||||||||||||.||.||||||||||||||||| ||| |
BPUM_1042___a 708 TGTCCCGATGACAAGGGGGATTATGGCGACGATGTATACTCAG------C 751
BSNT_01879___ 751 TGTGATC---TATCCGC---AGATGACCTGCATGATTTATATTCGGAA-- 792
||..||| ||| |.| |||.||..|| ||||...|||| |||
BPUM_1042___a 752 TGAAATCAGATAT-CACAAAAGAGGAATTG-ATGAAGCATAT---GAAAG 796
BSNT_01879___ 793 --TTTTACCAAGATTCATATTTTGTGAGAGTGAGGCCAAAAGGTCA---- 836
|||||..|||||||.||||||||.|||||||| ||.|||
BPUM_1042___a 797 GCTTTTATGAAGATTCCTATTTTGTCAGAGTGAG------AGATCACGAA 840
BSNT_01879___ 837 --GTACCCGCAAACGAAAGAAGTGTACGGCAGCAATTTCTGTGATATCGC 884
.||.||||||||.|.||||||.||||||||.|||||||||||.||
BPUM_1042___a 841 GTATATCCGCAAACAAGAGAAGTATACGGCAGTAATTTCTGTGACAT--- 887
BSNT_01879___ 885 CGTGACCCTCGATGAGA-GAACGAA----CAGAGTCACGATCGTCTCGGT 929
||.|..||..|.||| |||||.| ||||.|||||||.||.||.||
BPUM_1042___a 888 --TGGCTTTCATTTAGATGAACGTACAGGCAGACTCACGATTGTGTCTGT 935
BSNT_01879___ 930 AATCGATAATTTAATGAAGGGTGCCGCCGGTCAGGCAGTGCAAAACTTTA 979
.|||||.|||.|.||||||||.||.|||||.||.||.||.||||||||.|
BPUM_1042___a 936 GATCGACAATCTCATGAAGGGCGCAGCCGGCCAAGCGGTTCAAAACTTCA 985
BSNT_01879___ 980 ATTTGATGAATGGCTGGAATGAAGAAACTGGACTCACCATCACGCCAATT 1029
|..|.||.||.||||...|||||||..|.||.||.||.||.||.||..|.
BPUM_1042___a 986 ACATCATCAAAGGCTTAGATGAAGAGGCGGGCCTTACAATGACACCTCTC 1035
BSNT_01879___ 1030 TATCCATAG 1038
||||||||.
BPUM_1042___a 1036 TATCCATAA 1044
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