Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01877 and BPUM_1041
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_01877.1.24716.seq
# -bsequence dna-align/BPUM_1041___yitZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01877-BPUM_1041___yitZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01877-BPUM_1041___yitZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01877
# 2: BPUM_1041___yitZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 578
# Identity: 250/578 (43.3%)
# Similarity: 250/578 (43.3%)
# Gaps: 250/578 (43.3%)
# Score: 707.5
#
#
#=======================================
BSNT_01877 1 ATG--GGGAAAAACAAATTAAAATGGCTGACAT-TA-TCACAAAG-CAGC 45
||| .|.||||.||| |.||||||.| |.| || |||||||| |.||
BPUM_1041___y 1 ATGAATGCAAAAGCAA--TGAAATGGTT--CGTCTACTCACAAAGCCTGC 46
BSNT_01877 46 GTGTTTTTCGCAAGCAGCTTAATCTTTCCGTTTTATATTCTGTTTGTGAA 95
||||||||||.|||||.||.||.||.||.|||||.|||||.|||.|.||
BPUM_1041___y 47 -TGTTTTTCGCTAGCAGTTTGATTTTCCCTTTTTACATTCTTTTTATTAA 95
BSNT_01877 96 AAATATCGGCTCAAGCTACACACAGTTCGGTTTTTCCTACGGATTGTTCG 145
||||.|.||.||||||||..|||||||.|||.||.||||.||..||||.|
BPUM_1041___y 96 AAATGTTGGTTCAAGCTATTCACAGTTTGGTCTTGCCTATGGTCTGTTTG 145
BSNT_01877 146 GGTTGAGCGGAGCG----CTCATTTACCCGCTCCTCGGACGGCTGTCTGA 191
|.||.||||||||| .||||||| |||.|.||....||..|.||
BPUM_1041___y 146 GTTTAAGCGGAGCGTTTATTCATTTA----CTCTTAGGGAAACTACCAGA 191
BSNT_01877 192 AAGGTTTGACAGCCGT---TATTTTCTGCTTCTGAACTCGTGGGGGATGG 238
.|....||||||.||| |.|||..|..||| |.||||..||.||||
BPUM_1041___y 192 GACCACTGACAGGCGTCTCTTTTTAATCATTC---ATTCGTTCGGAATGG 238
BSNT_01877 239 CTGTTCTGCTTTTATATG----TCCCGCATAT--TGGAAGCGTCGTTCAA 282
|..|| ||||||| || |.||.||||| ..||| ||||..|||
BPUM_1041___y 239 CATTT---CTTTTAT-TGCTGTTTCCTCATATCACAGAA--GTCGAGCAA 282
BSNT_01877 283 GTGTATATCGTCCA----------AGTGCTGTTAGGGCTCTTTGGAGCGA 322
||||||||..|.|| .|||| |.||||...||||
BPUM_1041___y 283 GTGTATATGATTCAGCTTGCACTTGGTGC-GCTAGGCGGCTTT------- 324
BSNT_01877 323 TGCAAAAGCATGGAGAAAAAAGTGCTGATC-----GCTAA---------- 357
||||||||.|| |.|||||.||||..|| |||.|
BPUM_1041___y 325 --CAAAAGCACGG-GGAAAAACTGCTTGTCACGGAGCTGACAACAGAGAA 371
BSNT_01877 357 -------------------------------------------------- 357
BPUM_1041___y 372 TAAAAGAATGAAAGAGGTCGGCCGCTATCATTTTTGGACAGCTCTTTTTT 421
BSNT_01877 357 -------------------------------------------------- 357
BPUM_1041___y 422 CATCGATAGCGATTATGCTTGGCGGCCTGTTTGCAGATTTCTTCACCGTT 471
BSNT_01877 357 -------------------------------------------------- 357
BPUM_1041___y 472 TATTTCATTTTTTATGCAAGCTCCATATTATATTTATGCAGTGCCCTCAT 521
BSNT_01877 357 ---------------------------- 357
BPUM_1041___y 522 CGTCATCATGATGAAATATGAAAGATAA 549
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