Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01871 and BPUM_1039

See Amino acid alignment / Visit BSNT_01871 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01871___yitW.1.24716.seq
#    -bsequence dna-align/BPUM_1039___yitW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01871___yitW-BPUM_1039___yitW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01871___yitW-BPUM_1039___yitW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01871___yitW
# 2: BPUM_1039___yitW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 311
# Identity:     242/311 (77.8%)
# Similarity:   242/311 (77.8%)
# Gaps:           4/311 ( 1.3%)
# Score: 929.0
# 
#
#=======================================

BSNT_01871___      1 GTGGAAGAAGCATTAAAAGAAAACATCATGGGCGCCCTGGAACAGGTTGT     50
                     .||||.|||.||||.||||||||.||..|.||||||||.||||||||..|
BPUM_1039___y      1 ATGGATGAATCATTGAAAGAAAATATTTTAGGCGCCCTAGAACAGGTGAT     50

BSNT_01871___     51 CGATCCTGAGCTTGGCGTTGATATCGTGAACCTTGGTTTGGTATACGATG    100
                     .||.||||||||....||.||.|||||.||||||||..|.||.||.||||
BPUM_1039___y     51 TGACCCTGAGCTAAATGTCGACATCGTCAACCTTGGACTTGTCTATGATG    100

BSNT_01871___    101 TTGACATGGATGAAGACGGCTTAACGCACGTGACGATGACACTGACATCA    150
                     |.||..|.|||||..|.||...|.||.|..|.||||||||..|.||||||
BPUM_1039___y    101 TCGATCTTGATGAGAATGGAAAAGCGGATATCACGATGACCTTAACATCA    150

BSNT_01871___    151 ATGGGATG--CCCTTTAGCGCCGATTATCGTGGATGAGGTGAAAAAAGCA    198
                     |||||.||  |||||  ||.||..|.|||||||||||.||||||||||||
BPUM_1039___y    151 ATGGGGTGTCCCCTT--GCACCAGTGATCGTGGATGAAGTGAAAAAAGCA    198

BSNT_01871___    199 TTAGCGGACCTTCCTGAAGTGAAAGACACAGAGGTTCACATTGTATGGAA    248
                     |||...||.|||||.|||||||||||.|||||.||||||||.||||||||
BPUM_1039___y    199 TTAAGTGATCTTCCAGAAGTGAAAGAAACAGAAGTTCACATCGTATGGAA    248

BSNT_01871___    249 TCCGCCTTGGACTAGGGATAAAATGTCCAGATACGCAAAAATTGCGCTTG    298
                     ||||||||||||..|.||.||||||||.|||||||||||||||||.||.|
BPUM_1039___y    249 TCCGCCTTGGACGCGAGACAAAATGTCAAGATACGCAAAAATTGCACTCG    298

BSNT_01871___    299 GCATTCAATAA    309
                     |.|||||||||
BPUM_1039___y    299 GTATTCAATAA    309


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