Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01870 and BPUM_1038

See Amino acid alignment / Visit BSNT_01870 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01870___yitV.1.24716.seq
#    -bsequence dna-align/BPUM_1038___yitV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01870___yitV-BPUM_1038___yitV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01870___yitV-BPUM_1038___yitV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01870___yitV
# 2: BPUM_1038___yitV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 864
# Identity:     516/864 (59.7%)
# Similarity:   516/864 (59.7%)
# Gaps:         174/864 (20.1%)
# Score: 1313.5
# 
#
#=======================================

BSNT_01870___      1 GTGATACA-AATTGAGAATCAAACCGTTTC---CGGTATTCCGTTTTTAC     46
                     ||||| || .|||||..|.||||   ||.|   ||.||||||.|||||||
BPUM_1038___y      1 GTGAT-CACCATTGATGAGCAAA---TTACGCGCGATATTCCATTTTTAC     46

BSNT_01870___     47 ATATTGTAAAGG---------AAGAGAACAGGCACCGCGCTGTTCCTCTC     87
                     ||||.|||||.|         ||||.||     |||||    |.||.||.
BPUM_1038___y     47 ATATCGTAAAAGCTGAAAATAAAGACAA-----ACCGC----TCCCGCTT     87

BSNT_01870___     88 GTGATCTTTATCCATGGTTTTACAAGCGCGAAG-GAACACAATCTT-CAT    135
                     ||..|.|||||.||.||.||||||||.|| |.| ||.||||| ||| ||.
BPUM_1038___y     88 GTATTTTTTATACACGGATTTACAAGTGC-ACGCGAGCACAA-CTTACAC    135

BSNT_01870___    136 ATTGCTTATCTGCTTGCGGAGAAGGGTTTTAGAGCCGTTCTGCCGGAGGC    185
                     .|.||.|.||...|.|||||.||.||..|.||||...||.||||.||  |
BPUM_1038___y    136 TTCGCCTTTCATTTGGCGGAAAAAGGCATGAGAGTGATTTTGCCTGA--C    183

BSNT_01870___    186 TTTGC--ACCATGGGGAACGGGGAGAAGA----AATGGCTGTCGAAGAGC    229
                     |.|||  |.|||||.|.|.|...||||.|    ||   || |.||.||.|
BPUM_1038___y    184 TGTGCTTATCATGGTGTAAGATCAGAAAACCTCAA---CT-TAGAGGAAC    229

BSNT_01870___    230 TGGCG----GGGCATTTTTGGGATATCGTCCTTAACGAGAT---TGAAGA    272
                     |||||    ||    ||.|||||.||.|||||.|||||.||   ||||  
BPUM_1038___y    230 TGGCGTCAAGG----TTCTGGGAAATTGTCCTGAACGAAATACGTGAA--    273

BSNT_01870___    273 GATCGGCGTACTTAAAAACCTTTTT---GAAAAAGAGGGCCTGATAGACG    319
                      ||||...||||.||||....||||   ||||||.|   ..||||.||.|
BPUM_1038___y    274 -ATCGATATACTCAAAATATATTTTCAAGAAAAACA---ATTGATTGAAG    319

BSNT_01870___    320 GCGGCCGCATCGGTCTCGCAGGCACGTCAATGGGCGGCATCACAACGCTT    369
                     .||..|..||||||.|.|||||.||.||.|||||||||||||||||..||
BPUM_1038___y    320 CCGATCTGATCGGTGTTGCAGGTACTTCCATGGGCGGCATCACAACCTTT    369

BSNT_01870___    370 GGCGCTTTGACT------GCATATGATTGGATAAAAGCCGGC-GTCAGCC    412
                     ||.||    |||      ||  ||||||||||.|||| |||| ||.||||
BPUM_1038___y    370 GGTGC----ACTCGCCAAGC--ATGATTGGATTAAAG-CGGCAGTTAGCC    412

BSNT_01870___    413 TGATGGGAAGCCCGAA--TTACGTGGAACTGTTTC-----AGCAGCAGAT    455
                     |||||||.||.|||||  .||||    ||  .|||     |||| ||.||
BPUM_1038___y    413 TGATGGGCAGTCCGAAATATACG----AC--ATTCCTACAAGCA-CAAAT    455

BSNT_01870___    456 T---GACCATATTCAATCTCAGGGCATTGAA---ATTGATG-------TG    492
                     |   |||   ||.|        ||||  .||   |||||||       |.
BPUM_1038___y    456 TATGGAC---ATGC--------GGCA--CAAAGGATTGATGCAAGACATT    492

BSNT_01870___    493 CCGGAAGAGAAGGTACAGCAGCTGATGAAACGTCTCGAATTGCG------    536
                     .|.||.||..||||.||.|||| .||.|.||| |||    ||||      
BPUM_1038___y    493 ACAGACGAAGAGGTTCAACAGC-AATTAGACG-CTC----TGCGTCCTTA    536

BSNT_01870___    537 GGATCTCAGCCTTCAGCCGGA--GA--AACTGCAACAGCGCCCGCTTTTA    582
                     .|||.|.|..||.||..|.||  ||  ||.|..||    |.||.||.|||
BPUM_1038___y    537 TGATTTAACGCTGCAAACAGATCGATTAAATAAAA----GGCCACTGTTA    582

BSNT_01870___    583 TTTTGGCACGGCGCAAAAGATAAGGTCGTGCCTTACGCGCCGACCCGGAA    632
                     ||.|||||.|..|.|||.|||...||.||.|||||    |||.|..|.||
BPUM_1038___y    583 TTCTGGCATGCAGAAAACGATCCAGTTGTCCCTTA----CCGTCATGCAA    628

BSNT_01870___    633 A----TTTTATGA-----CACGATCAAATCCCATTACAGCGAGCAGCCGG    673
                     |    .|||||||     .|..|.|||  ||||.||.|..||..|.|||.
BPUM_1038___y    629 AAGCTCTTTATGATGAGTTAGCAGCAA--CCCAATATAAAGAAGATCCGC    676

BSNT_01870___    674 AACGCCTGCAATTTATCGGAGATGAAAACGCTGACCATAAAGTCCCGCGG    723
                     |.|...|.|..|||||...|||||.|.|.||||.||||||.|||.|..|.
BPUM_1038___y    677 AGCTAATTCGTTTTATTACAGATGGACAGGCTGGCCATAAGGTCTCAAGA    726

BSNT_01870___    724 GCAGCTGTGTTAAAAACGATTGAATGGTTTG-------------------    754
                     ..|||..||||..||||||||||.|||||||                   
BPUM_1038___y    727 CAAGCAATGTTTGAAACGATTGACTGGTTTGTGACACATCTGAAAAGCAC    776

BSNT_01870___    755 AAACGTACTTATAA    768
                     ||||||  |||.  
BPUM_1038___y    777 AAACGT--TTAG--    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01870 and BPUM_1038

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
