Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01865 and BPUM_1032
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01865___yitS.1.24716.seq
# -bsequence dna-align/BPUM_1032___yitS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01865___yitS-BPUM_1032___yitS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01865___yitS-BPUM_1032___yitS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01865___yitS
# 2: BPUM_1032___yitS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 916
# Identity: 604/916 (65.9%)
# Similarity: 604/916 (65.9%)
# Gaps: 125/916 (13.6%)
# Score: 1905.5
#
#
#=======================================
BSNT_01865___ 1 ATGACAGTTCATCTCATCGCTGACAGCGCCACTGATTTGCCTCGTTCTTA 50
|||||.||||||.||||.||.|||||.||..|||||.||||||.||||||
BPUM_1032___y 1 ATGACTGTTCATATCATAGCAGACAGTGCTGCTGATCTGCCTCTTTCTTA 50
BSNT_01865___ 51 TTTTGAAGAAAAAGGCAT----TG--GCTTTATTCCGCTCAGGGTTTCTC 94
||.|||.||| ||| || || |.|||||||||.|.||.|..|
BPUM_1032___y 51 TTATGATGAA-----CATAACATGACGC-TCATTCCGCTCCGTGTATTGC 94
BSNT_01865___ 95 TCGGCGATAAAGAATTCGAAGATGCAGTCACAATTCATGCGGATCAAATA 144
|.|||||..|.|||||.||||||....||||.|||.|..|..|.|||.||
BPUM_1032___y 95 TTGGCGAAGAGGAATTTGAAGATTTGATCACCATTGAACCAAAACAAGTA 144
BSNT_01865___ 145 TTTGAAGCGATGCAAAATGGAGAAACGCCTAAGACGTCGCAAGCCTCACC 194
|||||.||||||..|.|.||.|..|..||.||.|||||.||.||.|||||
BPUM_1032___y 145 TTTGATGCGATGAGACAAGGTGCCAGCCCAAAAACGTCACAGGCTTCACC 194
BSNT_01865___ 195 GCACACG-ATTAAAAA----TGTGTTT---TTGCAATATGCCGAAACAGG 236
..|| || ||||||.| |.||||| |||||..|..|| |.|||..
BPUM_1032___y 195 AAAC-CGAATTAAAGAAGCCTTTGTTTCTCTTGCACAAAACC-ATACATC 242
BSNT_01865___ 237 TG--ATCCCGCTCTTTACATTGCCTTTTCCTCAGGTCTCTCCGGCACGTA 284
|| ||| ||..||||||||||.||||..||.|||||.||.||
BPUM_1032___y 243 TGCAATC--------TATGTTGCCTTTTCATCAGAGCTTTCCGGTACATA 284
BSNT_01865___ 285 TCAGACAGCTGTCATGATCGCCAATGAAGTGAAGGAGGAATTCCCCGATT 334
.||.||.|||||.|||||.||.||.|||||||||||.||||.|||.||||
BPUM_1032___y 285 CCAAACGGCTGTGATGATGGCAAACGAAGTGAAGGAAGAATACCCTGATT 334
BSNT_01865___ 335 TCGATTTGCGGGTCATTGATTCCAAATGCGCTTCATTAGGATACGGTCTG 384
|.||||||||..||||||||||.|||||.||||||.|.||.||.||.||.
BPUM_1032___y 335 TTGATTTGCGAATCATTGATTCTAAATGTGCTTCACTCGGCTATGGGCTT 384
BSNT_01865___ 385 GCTGTCCAGCATG---------TTGCCGATCTCTGTATCAACGGGAATAC 425
||||||.|.||.| ||||| ||..||||.|||||
BPUM_1032___y 385 GCTGTCAAACACGCTCAATCACTTGCC---------ATTGACGGAAATAC 425
BSNT_01865___ 426 AATACAAGAAATTGAAACGTCTGTAAAGAACTTTTGC-AGCCAGCTT--G 472
||||||||||||||||||||||||||||.|.|||||| | |.||| .
BPUM_1032___y 426 AATACAAGAAATTGAAACGTCTGTAAAGCATTTTTGCGA---ATCTTTAC 472
BSNT_01865___ 473 AACACATTTTTACCGTTGATGATTTAACATATCTCGCGAGGGGCGGCCGG 522
||||.||||||||.||.||.||||||.|.|||.|.||.||.|||||..|.
BPUM_1032___y 473 AACATATTTTTACTGTAGACGATTTATCGTATTTAGCAAGAGGCGGAAGA 522
BSNT_01865___ 523 ATCTCCAAAACGTCCGCTTTTGTCGGCGGCCTGTTGAATATTAAACCGCT 572
|||...|||.|||||||.|||||.||.||..|.||.|.||||||.||..|
BPUM_1032___y 523 ATCAGTAAAGCGTCCGCATTTGTTGGTGGTTTATTAAGTATTAAGCCCAT 572
BSNT_01865___ 573 GCTTCAGATGGAGGACGGCAAGCTTGTGCCTCTGGAAAAAATCCGCGGAC 622
..|.||..|.|||||.||.|||||..|.||.||.||.|||||||||||||
BPUM_1032___y 573 TTTACACGTTGAGGATGGAAAGCTCATCCCCCTTGAGAAAATCCGCGGAC 622
BSNT_01865___ 623 AGAAGAAACTTTTCAAACGGATCATCGAGCTTATGAAAGAGCGCGG---G 669
..||.||.||.||.|||||.||.||.||.||.||||||||.||.|| |
BPUM_1032___y 623 GTAAAAAGCTGTTGAAACGCATTATTGAACTGATGAAAGAACGTGGAACG 672
BSNT_01865___ 670 GATGATTTGAGC-AATCAAACCGTCGGGATCAG--------------CTA 704
|| |||..| ||||||||.||.||.||.|| ||.
BPUM_1032___y 673 GA----TTGGTCAAATCAAACAGTTGGCATTAGTCATGGTGATGATCCTG 718
BSNT_01865___ 705 CGC-CGCGAACAAAGAAAAAGCCACGGATATGAAACACCTGATTGAGGAA 753
|.| .|| |||| ||.||||.|||..||||| |||
BPUM_1032___y 719 CACTTGC------AGAA---------GACATGAGACAATTGATT---GAA 750
BSNT_01865___ 754 GC----GTTCAAGCCGAAAGAAATCATTATGCATCCAATCAGTT------ 793
|| .||| |.||.||||||||...||| ||||.|
BPUM_1032___y 751 GCCGAATTTC-ATCCAAAAGAAATTGATAT--------TCAGATGGTCGG 791
BSNT_01865___ 794 --CAGCAATCGGCTCGCATGCCGGTCCAGGTACATTGGCAATATTCTTTT 841
||||..|.||.||.|||.|.||||||||.|||.|.||.||.| ||||
BPUM_1032___y 792 CGCAGCTGTTGGGTCCCATTCAGGTCCAGGCACACTTGCCATCT--TTTT 839
BSNT_01865___ 842 TA-AG--AAA--ATGA 852
|| || ||| ||.|
BPUM_1032___y 840 TACAGGCAAACCATAA 855
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