Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01858 and BPUM_1025
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01858.1.24716.seq
# -bsequence dna-align/BPUM_1025___yitH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01858-BPUM_1025___yitH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01858-BPUM_1025___yitH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01858
# 2: BPUM_1025___yitH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity: 310/906 (34.2%)
# Similarity: 310/906 (34.2%)
# Gaps: 507/906 (56.0%)
# Score: 474.5
#
#
#=======================================
BSNT_01858 0 -------------------------------------------------- 0
BPUM_1025___y 1 ATGACAAACGTTGTTCAACGAGCATTAACACTCGATGACATACCAGATCT 50
BSNT_01858 0 -------------------------------------------------- 0
BPUM_1025___y 51 TATCACCTTGTCTCAAGAGGTGGACTGGCCTGATTACAATGCGGAAGAGC 100
BSNT_01858 1 ------------------ATGGATGT-----------------AGTGGAT 15
||||||.| |||||||
BPUM_1025___y 101 TCACATCTCTTTTAACAAATGGATATTTCACAGGTTTTTCAACAGTGGAT 150
BSNT_01858 16 G----AGCTGAT----TGAGC-------TTC----ATGA-AGAA------ 39
| || |.|| ||.|| ||| |||| .|||
BPUM_1025___y 151 GGACAAG-TCATCTCGTGTGCAGGACTTTTCCAGTATGATCGAATGGCGT 199
BSNT_01858 40 CA--TGTTTCCGGCTT--------------ATTGCGGCT------TTGCA 67
|| ||.|.|||.|.| ||.|||||| |||||
BPUM_1025___y 200 CAATTGGTGCCGTCATTGTATCTAGGACACATCGCGGCTTAGGTCTTGCA 249
BSNT_01858 68 GGCAAGCCGGGTG-------GCCGGATTACGGCGAACAAGAG-----CTG 105
.|.||...|..|| ||..|||.|..|.||.||| || |||
BPUM_1025___y 250 AGAAAAATGATTGACACCCTGCTAGATCAATGTGATCAA-AGCATTCCTG 298
BSNT_01858 106 GC------ACTGCT--TGTCCAGCAAGGACG----CTTT--------TTC 135
.| ||.||| |||| |||||||| .||| .||
BPUM_1025___y 299 TCGTCTTAACCGCTACTGTC---CAAGGACGGCCAGTTTACGAAAAAATC 345
BSNT_01858 136 GGCTATCAAAATGTCAGC-GGTGATATTATTTCCTGCATCG--------- 175
||.|.|||.| |.|| |||.||||||...|.|.||..|
BPUM_1025___y 346 GGGTTTCACA----CGGCAGGTTATATTACGACTTACAAAGCGCAAAAAA 391
BSNT_01858 176 -------------GCTT-GTTTTTGT---------TTGGCC-GTCTTGCT 201
|||| | |.||| ||..|| ||||| ||
BPUM_1025___y 392 CAACCCCAGAGACGCTTCG--TGTGTCAGATGACATTCACCTGTCTT-CT 438
BSNT_01858 202 -----TCTATCG-GCCT--CGT-TATCGTTGA--CA----AGGAATATCA 236
|..|||| .||| ||| || |||| || |.||| |
BPUM_1025___y 439 GCCGATGAATCGCACCTTCCGTGTA---TTGAAGCATTAGATGAA----A 481
BSNT_01858 237 ACGGCTCGGTCTCGGCCGGCGTATGGTAAACG-----CCTGTATCACCCA 281
|.||| ||.|||..| ||.|| .||.|.|.| |
BPUM_1025___y 482 AAGGC---------GCAGGCACA----AATCGTTCAAGCTTTCTAA---A 515
BSNT_01858 282 AA--CGGATGAA---AACACCGC----CATCAGGCTTTG----------- 311
|| |||||||| |.||.||| .|||| |||
BPUM_1025___y 516 AAACCGGATGAACCGAGCAGCGCAGCGTATCA----TTGCAAAGAATGAA 561
BSNT_01858 312 CGCCACAAAAGAA---GGTTTGCCGCTTT----ATGAAAAAGCAGGT--T 352
|..|||.|||.|| |.||||| .||| .|||||.|.|.|.| |
BPUM_1025___y 562 CATCACGAAATAACTGGTTTTGC--ATTTGGTGTTGAAACACCTGCTAAT 609
BSNT_01858 353 TTCAT------ACGGCTGGTTCAGTGC-------GAAAGTACAGCTGTCA 389
||.|| ||.|||.| .||| ||||.|||||||.||.
BPUM_1025___y 610 TTAATGATTGGACCGCTTG----CTGCAAATGATGAAATTACAGCTCTCT 655
BSNT_01858 390 CAGT--------------TTTCAACCT----------------------T 403
|..| ||||..|.| |
BPUM_1025___y 656 CGCTGATTCGATCGCTTATTTCGTCTTATTCCGGTCCGATTCGTTTAGAT 705
BSNT_01858 404 ATACA-----AAAAAG-----------CTTGATTCTCAAATGT-----CG 432
||.|| |||.|| |.|||.||.| .||| |.
BPUM_1025___y 706 ATGCAGGAGGAAACAGCCGAGCGCCTCCATGAATCGC--TTGTTGAAGCA 753
BSNT_01858 433 GGTTTT--------------------TTCTTATGA--------------- 447
|||||| || .|||||
BPUM_1025___y 754 GGTTTTACGAAAACAAACAAAGCGCATT-ATATGATGATTCGCGGGAAAG 802
BSNT_01858 447 -------------------------------------------------- 447
BPUM_1025___y 803 AAAAGCTGAACGATCCTGCACTTCTTTATTTCCTCGCCTCTCAAGCATTC 852
BSNT_01858 447 ------ 447
BPUM_1025___y 853 TCGTAA 858
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