Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01844 and BPUM_1014
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01844___yisR.1.24716.seq
# -bsequence dna-align/BPUM_1014___yisR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01844___yisR-BPUM_1014___yisR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01844___yisR-BPUM_1014___yisR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01844___yisR
# 2: BPUM_1014___yisR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 565/958 (59.0%)
# Similarity: 565/958 (59.0%)
# Gaps: 185/958 (19.3%)
# Score: 1368.5
#
#
#=======================================
BSNT_01844___ 1 ATGCCTCG--------CATCCTGTTTACAGTCCCGCCTTTTCCGGTATTT 42
|||..||| || |||||.||.|||||.||.|||||.|.|
BPUM_1014___y 1 ATGAATCGATTTATTACA-----TTTACTGTACCGCCGTTCCCGGTTTAT 45
BSNT_01844___ 43 ATCGCAGCTGGGGAAGGGGTTTTTAAAAAAGGAGAAACCCATGT-----G 87
|||||..||||..||||.||.|||.|..|||||||||..|||.| |
BPUM_1014___y 46 ATCGCTTCTGGCAAAGGCGTATTTGATCAAGGAGAAAGACATATCTCTAG 95
BSNT_01844___ 88 AAACGTGTATTCTCCGTGTTTGATCTGATATATGTCA-AACAGGGAACGT 136
||.| |||.|||||||||||||..|.||||||| ||.||||.| |.
BPUM_1014___y 96 AACC-----TTCACCGTGTTTGATCTTCTTTATGTCACAAGAGGGCA-GC 139
BSNT_01844___ 137 TATATATAACGGA--AAATGAA---ACATCGTTTTCTGTTGAAGGCGGCG 181
|||..||.||.|| |.|.||| .|||| ..||..|||..||.|
BPUM_1014___y 140 TATGGATCACAGAAGACAGGAAGGCTCATC-----ACGTAAAAGAAGGAG 184
BSNT_01844___ 182 AGTACATCTTGCTTTCTCCCGGTCT----------TGAACACTACGGGAC 221
|.||.|||.|.||.||.||.|| || ||.|||||
BPUM_1014___y 185 AATATATCATTCTCTCACCTGG-CTTGTCGCATGGTGGACACT------- 226
BSNT_01844___ 222 GAAGGGCA-GTGATGAAGCAAC-CTCCTACTAT---TGGCTTCA--CTTC 264
.|.|| |.||.||||.||| | ||||| |||||.|| .|||
BPUM_1014___y 227 ---TGCCATGCGAAGAAGAAACAC----ACTATGAGTGGCTCCATTTTTC 269
BSNT_01844___ 265 GA-TGAACATCGATATGAATTTACGGCAAA--GG--GAGGCAGCA-ACTG 308
|| || |||..|.|||.|| |.|||| || ||| ||.| ||||
BPUM_1014___y 270 GATTG---ATCCTTTTGAGTT---GACAAATCGGCCGAG--AGAACACTG 311
BSNT_01844___ 309 GTCTGAGCTTCAGCAGGAAA--AAGGGAGCTTCGAAGAGCCGGCCCGCTA 356
||.|||..|..|.|| ||| |||..|.|||.|||.|||||||...|||
BPUM_1014___y 312 GTTTGATATGAAACA--AAATCAAGCCACCTTTGAAAAGCCGGCGACCTA 359
BSNT_01844___ 357 CGGATTGGCCTTGCCGAGAAAAGGCAAGGTGCAGCGCCCGCAGTTTATGG 406
.|.|||...||||||..|.|||||.||.|||.| |.||
BPUM_1014___y 360 TGAATTTAGCTTGCCCCGTAAAGGAAAAGTGAA-------------AGGG 396
BSNT_01844___ 407 CGCA--GCAGTTTGAAAAGCTGATCGATTACTC---TGCGG-----AAA- 445
.|.| |.| ||.||||||| |.| ||.|.| ||||| |||
BPUM_1014___y 397 AGAAATGTA-TTAGAAAAGC--ACC--TTGCACAGATGCGGGCCCTAAAT 441
BSNT_01844___ 446 ----AC---TCTGATTTGCCGCTCAGAAAGCAAATTTTATTTGCGGAGCT 488
|| |||||..|||||||.|.|||.||..|....||||.|||.||
BPUM_1014___y 442 GATGACGCATCTGAACTGCCGCTGAAAAAACAGCTACAGTTTGAGGAACT 491
BSNT_01844___ 489 GATGCTGCATCTTCAAAAAGAAGCGTTCCAAATACCGTCTGCGAAAGAGC 538
|.|..|.|||.|.|||||||||||.||.||.||.||...|||.||.|||.
BPUM_1014___y 492 GCTCATTCATTTACAAAAAGAAGCCTTTCATATTCCAAGTGCAAAGGAGA 541
BSNT_01844___ 539 GGGTAGCCTGGGAGGCGGCCCGGTA-CTTACAGGAG---CACTATAAGGA 584
..||.||.|..||.|.||..|..|| ||| ||| |||| |.|.||
BPUM_1014___y 542 ATGTCGCTTCAGAAGTGGTTCATTATCTT----GAGCGTCACT-TTATGA 586
BSNT_01844___ 585 AAAGACGACAATCAAGGATCTGTCGCTCGC------CCTTCACTACCATC 628
|.|.||..||| |.|||| ..|||.|| .||.|||||.||||
BPUM_1014___y 587 AGAAACTGCAA--ATGGAT---GAGCTTGCAGAGAAACTGCACTATCATC 631
BSNT_01844___ 629 AGGATTATGTGAGCCGCTGTATGCAGCAGGTGCTCGGCGTAACTC-CGGC 677
..|||||..|.|...|.||.||||||..||||...|| |||| ||.|
BPUM_1014___y 632 CTGATTACATAACAAGGTGCATGCAGACGGTGTATGG----ACTCACGCC 677
BSNT_01844___ 678 A---CAATACACGAACC-------GGGTGAGAATGACGGAAGCGAAGCGT 717
| |||||||..||.| ||.|||.||.|.| || ||||.|
BPUM_1014___y 678 AAACCAATACATCAATCGTCTCAAGGTTGAAAAAGCC--AA---AAGCAT 722
BSNT_01844___ 718 -CTTTTATCCTCTACAAATGATAAAATGG--GCGTTATTGCGGAAACGGT 764
||| .||||.||.||||||.||||.| ||| ||.||.|||..|||
BPUM_1014___y 723 GCTT---GCCTCAACGAATGATCAAATCGCAGCG--ATCGCTGAACAGGT 767
BSNT_01844___ 765 CGGAATGGAAGATCCGACATACTTTTCAAAACTCTTTAAGCAGATAGAAG 814
.||.||.||.||.||.||.||.|||||.||.||.|||..|||.|..||||
BPUM_1014___y 768 AGGCATTGACGACCCTACGTATTTTTCTAAGCTGTTTCGGCAAAACGAAG 817
BSNT_01844___ 815 GCATTTCACCAATTGAATACCGGAAAATTGTCAGC-CG------GAAAGT 857
||||..||||.||.||.|||| ||||.| || |||.|.
BPUM_1014___y 818 GCATGACACCTATCGAGTACC--------GTCATCTCGCAAAAAGAACGA 859
BSNT_01844___ 858 TCAA-TAA 864
.||| |||
BPUM_1014___y 860 CCAAGTAA 867
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