Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01842 and BPUM_1012
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_01842___yisP.1.24716.seq
# -bsequence dna-align/BPUM_1012___yisP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01842___yisP-BPUM_1012___yisP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01842___yisP-BPUM_1012___yisP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01842___yisP
# 2: BPUM_1012___yisP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity: 518/948 (54.6%)
# Similarity: 518/948 (54.6%)
# Gaps: 249/948 (26.3%)
# Score: 1156.0
#
#
#=======================================
BSNT_01842___ 1 -------ATGAAAGAGATA-AAAGAAGCCTATCAGCAATGCGGCCAGATC 42
||| || ||| |||||.|| |.||.
BPUM_1012___y 1 GTGGTTGATG-------TACAAA---------CAGCATTG-----AAATT 29
BSNT_01842___ 43 GTCAGCGCCCGCGA-ACC-----AGCCTGTTACAAAGCATTTT--CGT-- 82
||..|.| || ||| |.||..||.||||.|.|||| |||
BPUM_1012___y 30 GTGTGAG-----GAGACCATTCAAACCCATTCCAAAACGTTTTACCGTGC 74
BSNT_01842___ 83 -TTCTTCC--GCTG------AAGCAAAGGCAGGCAGCTTGGGCGGT-TAT 122
|| |||| |||| |||.||.|||||||.|..|||||.|| |||
BPUM_1012___y 75 CTT-TTCCATGCTGCCTAAAAAGAAACGGCAGGCTGTCTGGGCTGTGTAT 123
BSNT_01842___ 123 GGCGTTTTGCCATACGGCAGCCAATGCGGATGAGAAGGCGTT-------- 164
.|.|||||| ||| ||.||.|||||.| ||
BPUM_1012___y 124 -TCCTTTTGC----CGG-----AAAGCAGATGATA-----TTGTAGATGA 158
BSNT_01842___ 165 ATC-----TGCCATTGAAGCGGAG-----------GCGGAAGATGT---- 194
||| .|||| .|||.|||| .||..|||.||
BPUM_1012___y 159 ATCACCCTCGCCA--AAAGAGGAGCTTGCCTCCTTTCGAGAGACGTTTGA 206
BSNT_01842___ 195 ----TTTTTCC--GGT-ACGTATAACGGGAATCATTTTTTGTGGAAGGCT 237
|||||.| ||| |.|||.|.| |||||.||....|||||...||.
BPUM_1012___y 207 TCGATTTTTACAAGGTGAGGTAGATC-GGAATGATCCGATGTGGGTAGCG 255
BSNT_01842___ 238 TTCGGCCATGCGTACCAAACCTTTACA----------CTGGA--CAGCAA 275
.|.| |.||.|||||| || .|||| .||||
BPUM_1012___y 256 CTAG---------AACATACCTTT-CAAGAGTTTCGTATGGATGAAGCA- 294
BSNT_01842___ 276 GCCATTCCGTGAGTTCATTGCCGCA----CAGAAAGCGGA---AGATAA- 317
||.|||||||| .||||..|| |||.|...||| |||..|
BPUM_1012___y 295 -CCGTTCCGTGA----CTTGCTCCAAGGTCAGGAGATGGATTTAGAGCAG 339
BSNT_01842___ 318 -ACCGTTTGGAAACCTT-GATGAATTGCTCATGCACGCATACCAGACAGG 365
||||.|..|||||.|| ||||||||||||||..|..|.|||||
BPUM_1012___y 340 CACCGATATGAAACGTTAGATGAATTGCTCATTTATTCCTACCA------ 383
BSNT_01842___ 366 CGGCGC-AG--CC---GGATTGATGCTGCTCCCGATTATGGCGCGCCGGC 409
.|..|| || || |||.|.||||||||.||.|||||.||.|..||..
BPUM_1012___y 384 TGTTGCTAGTACCGTTGGACTTATGCTGCTTCCCATTATTGCACCGCGTA 433
BSNT_01842___ 410 ATCAGGAACAGCTGACACATGCAGCCGGTTCTCTCGGTTTAGCGATTCAG 459
|..|.||||||||||.|.|.|||||...|||..|.||..|.||.||.|||
BPUM_1012___y 434 AAAAAGAACAGCTGAAAGAAGCAGCGATTTCATTAGGGATTGCTATGCAG 483
BSNT_01842___ 460 CTG----ATTCGGATTCTGAGAGATATCGGC-ACTGGCCAACAGC--AAA 502
||| || ||.||..|.||.|||||| | ||..|| ||| |||
BPUM_1012___y 484 CTGACCAAT----ATCCTTCGTGACATCGGCGA--GGATAA-AGCCGAAA 526
BSNT_01842___ 503 AAAGCCG------TATCCCTCGGGAAGTAATGCAGCAATTCGGCTATACA 546
.|..||| |.|.||...|.||||.|||.|.||||||||.||||||
BPUM_1012___y 527 GAGACCGCATTTATTTGCCAAAGCAAGTCATGGATCAATTCGGATATACA 576
BSNT_01842___ 547 GAGGCTGATCTCCAAAAAGGCACCGTAAATAAGGCGTTCACAATG-ACG- 594
|||...||..|.|||.||||||..||.|||.|.||.||| || | |||
BPUM_1012___y 577 GAGCAAGAATTGCAAGAAGGCATTGTCAATCAAGCATTC-CA--GCACGT 623
BSNT_01842___ 595 -TGGGAGTATATCGCTTTTGAAGCGGAAGCCTACCTTGAAGAGT------ 637
||||||||.||.||.||||||||.||.||.|||...||.||||
BPUM_1012___y 624 ATGGGAGTACATTGCCTTTGAAGCAGAGGCATACTACGAGGAGTTTTTTG 673
BSNT_01842___ 638 ------GTCAGGATGCCTTGCCGCTATTTCCGCAGTATTCTCAAAAAACG 681
.|||.|| |||.||||..|||||.|..|.|.|.
BPUM_1012___y 674 ACCATCTTCATGA------------ATTCCCGCTTTATTCACGTATACCA 711
BSNT_01842___ 682 GTGAAAGCTGCTCTTCATTTGTACCGGGCTGTTTTAGAAAAAATCCGGGC 731
||||||||.|||..|||.||.||....||..|||||||.|||| |..|.
BPUM_1012___y 712 GTGAAAGCAGCTGCTCACTTTTATAAAGCCATTTTAGATAAAA--CAAGA 759
BSNT_01842___ 732 GAA-------GCAGCACGATGTATTTCAAC----------TTCACTTCGC 764
||| .|.|| |||||| || ||.|.||||
BPUM_1012___y 760 GAAAATGAATACCGC-----GTATTT--ACAGAGCGATCATTTATTTCG- 801
BSNT_01842___ 765 TCTCACAGAGACCGAAGTGAAGCA--GATTCTCTCTGATAT---CTAA 807
.||..||| || ||||| .|||.|....||||| .|||
BPUM_1012___y 802 ---AACCAAGA---AA---AAGCACTTATTTTAGAAGATATTACGTAA 840
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