Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01834 and BPUM_1007
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_01834___yisK.1.24716.seq
# -bsequence dna-align/BPUM_1007___yisK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01834___yisK-BPUM_1007___yisK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01834___yisK-BPUM_1007___yisK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01834___yisK
# 2: BPUM_1007___yisK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 966
# Identity: 629/966 (65.1%)
# Similarity: 629/966 (65.1%)
# Gaps: 120/966 (12.4%)
# Score: 1847.0
#
#
#=======================================
BSNT_01834___ 1 ATGAAATTTGCGACAGGGGAACTTTACAACCGAATGTTTGTCGGCCTGAT 50
|||||.|||...|||||.||..|..|.|.|.||||||||.|.||..|..|
BPUM_1007___y 1 ATGAAGTTTTTTACAGGAGAGATACATAGCAGAATGTTTATTGGGGTAGT 50
BSNT_01834___ 51 CATTGACGATGAGAAAA----TTATGGATTTGCAGAAGGCTGAAAAAAAA 96
||||||.|||| || ||||||||.|..|.|||||.|||...|||
BPUM_1007___y 51 CATTGATGATG----AATGGGTTATGGATGTCAAAAAGGCAGAAGCCAAA 96
BSNT_01834___ 97 CTGTTTGAACTTGAGACGATTCCGGGA-----TCGCTGATTGAATGTATC 141
.|.||.||.|||||||| |||.|...| |.|| |||||||||
BPUM_1007___y 97 TTATTCGAGCTTGAGAC-ATTGCCAAACTCTTTAGC----TGAATGTAT- 140
BSNT_01834___ 142 GCAGAAGGG-GATAAATTCGTTGCGCATG-CAAGGCAGCTGGCC--GAGT 187
.||.|.||| ||.||.||.||||.||||| ||| .||.|| || ||.|
BPUM_1007___y 141 TCATATGGGAGACAAGTTTGTTGAGCATGTCAA-ACAACT--CCTTGACT 187
BSNT_01834___ 188 GGGC----AAAGAAACCGAATGATGAGCTGGGATCATTTATG--TATTCA 231
|||| ||| |||| |.||.||.|..||.|| ||||| |||.|.
BPUM_1007___y 188 GGGCTGAGAAA-AAAC---AAGAAGACCGTGGTTC--TTATGTTTATCCG 231
BSNT_01834___ 232 TTATCTGAGGTGAAGCTTCATGCACCCATTCCGAAGCCATCAAAAAATAT 281
.|.||.||.|||||.||.|||||.||.|||||.||||||.|.||||||||
BPUM_1007___y 232 CTGTCGGACGTGAAACTCCATGCGCCAATTCCAAAGCCAGCTAAAAATAT 281
BSNT_01834___ 282 CATCTGCATCGGCAAAAACTACCGGGATCACGCGATTGAAATGGGGAGCG 331
.||.||..|.||.||.||.||.|..|||||.|..||.||||||||.||.|
BPUM_1007___y 282 TATGTGTGTTGGAAAGAATTATCAAGATCATGTCATGGAAATGGGAAGTG 331
BSNT_01834___ 332 AGGCTGATATTCCGGAGCATCCGATGGTATTTACAAAATCGCCGGTA--A 379
..||.||||||||..|..||..||||.|.|||||.||..|.|| || .
BPUM_1007___y 332 CAGCGGATATTCCTAAAGATGTGATGATCTTTACGAAGGCACC--TACTT 379
BSNT_01834___ 380 CGGTTACGGGGCATG----GTGATATCGTAAAGAGC---CATGAAGAGGT 422
|.||.|..||.|||| | ||||||.| | ||||||||.||
BPUM_1007___y 380 CAGTCATTGGACATGAAGCG-GATATCCT------CCTTCATGAAGATGT 422
BSNT_01834___ 423 TACCTCTCAGCTTGATTATGAGGGAGAACTTGCTGTCGTGATCGGAAAAA 472
.||...|.|.||.||||||||.||.||.|||||..||||||||||.||||
BPUM_1007___y 423 GACGAGTGAACTAGATTATGAAGGGGAGCTTGCGATCGTGATCGGCAAAA 472
BSNT_01834___ 473 GCGGGACTCGCATTTCAAAAGAAGA-TGCATATGACCATGT--------- 512
..||| |||||.| ||||..|||..||||
BPUM_1007___y 473 CAGGG-------------AAGAATATTGCACCTGAAGATGTCCGCGATTA 509
BSNT_01834___ 513 ----TTTCGGATATACGATTGTGAATGATATCACGGCGCGTGATCTGCAA 558
||| ||.||.||.|||.|.|||||..|.|||||..|.|||.|.||.
BPUM_1007___y 510 TCTATTT-GGTTACACCATTTTAAATGACGTAACGGCAAGAGATTTACAG 558
BSNT_01834___ 559 AAAAGGCATAAGCAGTTTTTTATCGGAAAAAGCTTGGATACGACATGTCC 608
||||..||.||.||.|||||.||.||.||||||||.|||||.||.||.||
BPUM_1007___y 559 AAAAAACACAAACAATTTTTCATAGGTAAAAGCTTAGATACAACCTGCCC 608
BSNT_01834___ 609 GATGGGGCCCGTGCTTGTACATAAATCATCTATTCAGGAGC-CAGAGCGC 657
|||.||.||.....||||.|||||||||...|||.||||.| |.|.||||
BPUM_1007___y 609 GATAGGACCTTATATTGTGCATAAATCAGTGATTGAGGATCACGGTGCGC 658
BSNT_01834___ 658 CTCAAGGTTGAAACAAGAGTCAACGGCGAGCTGCGCCAATCCGGTTCGGC 707
.|| |.||.|||||||..||.|||||.||..|.||||| .||.||
BPUM_1007___y 659 TTC-ATGTGGAAACAAAGGTGAACGGAGAAGTTCGCCA------GTCTGC 701
BSNT_01834___ 708 AAG---CGA---TATGATCTTTTCCATTCCG-GAATTAATTG---AAACC 747
||| .|| .|||||.||.||||| || ||| .|||| ..||.
BPUM_1007___y 702 AAGTACAGAATTAATGATTTTCTCCAT--CGAGAA--CATTGTGTCTACT 747
BSNT_01834___ 748 CTCTCAAAGGGGATGACGCTTGAAGCGGGCGACATTATTGCCACCGGTAC 797
||.|||||.||||||||.||.|||||.||.|||||.|||||.||.||.||
BPUM_1007___y 748 CTTTCAAAAGGGATGACACTAGAAGCTGGTGACATCATTGCAACGGGAAC 797
BSNT_01834___ 798 GCCGTCTGGTGTCGGCAAGGGGTTTACGCCTCCAAAATTCTT-GCGGTCA 846
.||.|||||.||.|||||.||.|||...||.||.|||||||| || .|||
BPUM_1007___y 798 ACCTTCTGGGGTTGGCAAAGGCTTTGAACCGCCTAAATTCTTAGC-TTCA 846
BSNT_01834___ 847 GGTGACAAAATTGATATTACAATTGATCCGATCGGAACGCTGTCAAA--- 893
||.|||.||||.||.|||||.|||||.|||||.||||||||.|||||
BPUM_1007___y 847 GGGGACCAAATCGACATTACGATTGAACCGATTGGAACGCTATCAAATCG 896
BSNT_01834___ 894 --CCAAATTGGCTGA- 906
.||||| |
BPUM_1007___y 897 CGTCAAAT------AA 906
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