Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01832 and BPUM_1005
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_01832___yisJ.1.24716.seq
# -bsequence dna-align/BPUM_1005___cotH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01832___yisJ-BPUM_1005___cotH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01832___yisJ-BPUM_1005___cotH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01832___yisJ
# 2: BPUM_1005___cotH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1233
# Identity: 586/1233 (47.5%)
# Similarity: 586/1233 (47.5%)
# Gaps: 447/1233 (36.3%)
# Score: 1176.5
#
#
#=======================================
BSNT_01832___ 1 ------------------------ATGGAGCGCGTGCATTTATTT--TTT 24
||||| ||||| .||
BPUM_1005___c 1 ATGACCACAGAACCTTTAAAGCAAATGGA-----------TATTTGGATT 39
BSNT_01832___ 25 CATCGGGAGCAGCTGA----------AAAGGA---AAGGTACAGCCAA-- 59
||||...||.|.|||| |||.|| |.||.||..|.||
BPUM_1005___c 40 CATCCAAAGGACCTGATTGAATTAAGAAAAGACATATGGAACGACGAACC 89
BSNT_01832___ 60 -----GGGGCTTTTCGTAA------CAGATCGATCTGTTTCTCCCATT-- 96
.||||.|||.|.|| ||||||.| .||.|.||||
BPUM_1005___c 90 TGTTGAGGGCATTTTGAAAACTGGTCAGATCAA-----ATCACACATTTA 134
BSNT_01832___ 97 --CTTC----------TCACACAGCGTGACAGAGCGGAAAAGGCA-TCCT 133
|||| ||.|||| |.|.|.|||.|||||...| ||||
BPUM_1005___c 135 CGCTTCATACCGGGGATCTCACA---TCAGAAAGCTGAAAAAAAAGTCCT 181
BSNT_01832___ 134 ATGAAATCAGCTGGGA------AAAGTCTCTGCTTGGTGAAAG----GAC 173
||.|||| .|| ||||.| |||| |||
BPUM_1005___c 182 ATCAAAT------TGAATATCGAAAGCC-----------AAAGCAAAGAC 214
BSNT_01832___ 174 A------------CTTT-TTTTGAATGCAGAACAGGATGATCCGTCCCTG 210
| |||| .|||.|||||||||.|..||||.||.||..|.
BPUM_1005___c 215 AAGGCGAATCTATCTTTCATTTAAATGCAGAATACAATGACCCTTCATTT 264
BSNT_01832___ 211 ATGCGGCGCAGACTCGCCTATTGTTTTTTTGACCAGATCGGCGTACCTGC 260
||.||...||||||..|||.||.|||.|||||.|||||.||.| |||
BPUM_1005___c 265 ATCCGAAACAGACTGTCCTTTTATTTCTTTGAGCAGATAGGAG----TGC 310
BSNT_01832___ 261 T----CCCGCTGCCTC----GTACAGCTTTCTGACCATCAATGGCCAG-C 301
| ||.|||||.|| || .|||||.||.||.||.|| .|| .
BPUM_1005___c 311 TAAGCCCTGCTGCGTCTCATGT----GTTTCTCACGATAAACGG-AAGAA 355
BSNT_01832___ 302 CTGAAGGCATTTATTTGAACATCAAGAA-CCATC---------------- 334
..||||||||||||||.||.|| |||| ||.||
BPUM_1005___c 356 AAGAAGGCATTTATTTAAAAAT--AGAATCCGTCGATGAGCACTTTTTTC 403
BSNT_01832___ 335 -----AGCCAGCCGGTAAAAGGAG----------TTACGGAGT-GAAGAC 368
||.|||| |...||||| |||.|.||| ||.|||
BPUM_1005___c 404 AAAAAAGACAGC---TTTCAGGAGGCGGCATTTATTATGCAGTCGATGAC 450
BSNT_01832___ 369 G--GCCGATCCAAGGGTTCCATTGTCCCTTTT------------------ 398
| |||.|| ||.||||||||
BPUM_1005___c 451 GACGCCAAT------------TTTTCCCTTTTGAGTTCATTTGATAAAAA 488
BSNT_01832___ 399 -----------------------------------TAACAATGATTTCTC 413
.||||..||.|||||
BPUM_1005___c 489 GCCAAAAAAACACCTTCTCCTCGGGTATGAGAAAAAAACAGGGACTTCTC 538
BSNT_01832___ 414 GGCATTCT-------TACATGAATTT-TTCATAC-TGATCCGCACAGCCG 454
..|||..| ||..||||||| || ||| |..||..||||||..
BPUM_1005___c 539 AACATGATCAGCAGCTAAGTGAATTTATT--TACTTTCTCAACACAGCGA 586
BSNT_01832___ 455 GAGATGACGAATTGGCTGAAAGGATTAAATTGTATCTGGATGTCAAGCTG 504
.|||||||..|||.||.||||.||||.||...||.||.|||||.|..|.|
BPUM_1005___c 587 AAGATGACATATTTGCAGAAAAGATTGAACATTACCTAGATGTGACCCAG 636
BSNT_01832___ 505 TTTTTTTTGTGGCTGATCGGCAACGCCTGCAC-CAA-----TCAAGGCTT 548
|.|||....|||||.||.||...||..||||| ||| |.|.|||||
BPUM_1005___c 637 TATTTCCGCTGGCTCATTGGTGTCGTGTGCACACAAAACTTTGACGGCTT 686
BSNT_01832___ 549 ------TTACTACACATTTTGTTTAAACGAATCCGGTCGGCTT-TACGT- 590
|.|||||.|..|||.|.|.||.||| |..|.|.|.|| .|.||
BPUM_1005___c 687 TGTCCATAACTACGCTCTTTATGTGAATGAA-CAAGGCAGATTCCAAGTG 735
BSNT_01832___ 591 -TTCCCCG-----ATG--GAGACAAGATCGCTTGCCGT-ACAAGAATGGT 631
||||..| ||| |.||||.| ..||||| |||...||||
BPUM_1005___c 736 CTTCCTTGGGATTATGATGCGACATG-----GGGCCGTGACATCCATGG- 779
BSNT_01832___ 632 ATGAAGAA--GACCCGCTTCTGA--------CAAAAGGAAAGACGCTTT- 670
.|||||| | ||.|.||| || |.|||..|||||
BPUM_1005___c 780 -AGAAGAAATG----GCGTTTGATTATATTCCA----GTAAGCGGCTTTA 820
BSNT_01832___ 671 ---CGTCAAGGCTTCTATCCATTCCCGCCTTCAGGTCGCAATATCACACC 717
|||.|| ||.|.| .|||.| |.| ||||| ||
BPUM_1005___c 821 ATACGTTAA--CTGCGA--GATTAC----------TAG--ATATC---CC 851
BSNT_01832___ 718 TTAATGAAAAACGTGCTGAAGCGGTCGTTTACTATTGAACGATTATCTCC 767
||.||..||.| |||| |||||..|||.||.||
BPUM_1005___c 852 TTCATTTAAGA-------AAGC---------CTATTACACGCTTTTC--- 882
BSNT_01832___ 768 TCTCATCAACG-AATGG---CACCTT--------GAC---ATTTGTC--- 799
||.| ||| |.|.| |||.|| ||| .||||||
BPUM_1005___c 883 ---CAGC-ACGTACTCGATACACATTTTTTAGCAGACCAGCTTTGTCCAG 928
BSNT_01832___ 800 --------AAA----GTGCTGCT------------------GATGATCCT 819
||| .||||.|| .||||||||
BPUM_1005___c 929 TGATTGAGAAATGGCATGCTTCTATTGAGAAGCGAATTGGAAATGATCCT 978
BSNT_01832___ 820 TTTATCAAAA------AAAG-CCCCTTTCAAATCGAAAAGGAGCAGACCA 862
|.|| |||.| |||| |..|||.| |||| |.||.|||.| |
BPUM_1005___c 979 TATA-CAAGAGACCGCAAAGACATCTTAC-AATC-AGAACGAGAA----A 1021
BSNT_01832___ 863 ACATACTTAGAGAAATTGAGGAACGGCAGGAC--TTTTTGCAAGC--ACA 908
.|||.|.|..|.|.||..|..||.||| ||| |.|||.||.|| | |
BPUM_1005___c 1022 TCATCCGTCAATATATCAACAAAAGGC--GACGTTATTTACAGGCTGA-A 1068
BSNT_01832___ 909 CTTAGCAAGACTTTAG----------------- 924
.|.||.|| ||
BPUM_1005___c 1069 ATAAGAAA------AGAGAGAGAGGGAACGTAA 1095
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