Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01825 and BPUM_1002

See Amino acid alignment / Visit BSNT_01825 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_01825___gerPB.1.24716.seq
#    -bsequence dna-align/BPUM_1002___gerPB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01825___gerPB-BPUM_1002___gerPB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01825___gerPB-BPUM_1002___gerPB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01825___gerPB
# 2: BPUM_1002___gerPB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 260
# Identity:     160/260 (61.5%)
# Similarity:   160/260 (61.5%)
# Gaps:          52/260 (20.0%)
# Score: 510.0
# 
#
#=======================================

BSNT_01825___      1 ATGAACTTCTATATTAATCAAACCATTCAAATCAACTATCTCCGGCTGGA     50
                     .||||||||||||||||||||.|.||.|||||.||.|||.|.||..|.||
BPUM_1002___g      1 TTGAACTTCTATATTAATCAAGCGATACAAATTAATTATTTGCGTGTAGA     50

BSNT_01825___     51 ATCAATCAGCAACTCCTCCATTCTGCAAATCGGGAGCGCCGGATCAATCA    100
                     .||..|.||.||||||||..|.||.|||||.||||||||.||.|||||.|
BPUM_1002___g     51 GTCTGTTAGTAACTCCTCTGTGCTACAAATTGGGAGCGCTGGGTCAATTA    100

BSNT_01825___    101 AGTCTTTGTCAAATTTGTATAATACAGGAAGCTATGTAGAACCGGCACCA    150
                     |..||.|.||.|||||||||||.||.||.|||||.||||||.|.||||  
BPUM_1002___g    101 AAGCTCTTTCTAATTTGTATAACACGGGCAGCTACGTAGAAGCAGCAC--    148

BSNT_01825___    151 GAAGTTTCTGGCTCAG--GGCAACCGC--------------TCC--AGCT    182
                            |||.|.|||  ||||  |.|              |||  ||..
BPUM_1002___g    149 -------CTGCCGCAGCAGGCA--CACAAGGAATTCAAGAATCCCAAGGC    189

BSNT_01825___    183 GCAGGAGCCCGACACAGGTTCATTGGTCCCGCTCCAGCCTCCTGGCCGTT    232
                     |||  |||.|.||||     |.||.||.|||||.|||.|.||        
BPUM_1002___g    190 GCA--AGCACAACAC-----CTTTTGTACCGCTTCAGTCACC--------    224

BSNT_01825___    233 AA--------    234
                     ||        
BPUM_1002___g    225 AACAACTTAA    234


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