Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01821 and BPUM_1000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_01821___gerPD.1.24716.seq
# -bsequence dna-align/BPUM_1000___gerPD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01821___gerPD-BPUM_1000___gerPD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01821___gerPD-BPUM_1000___gerPD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01821___gerPD
# 2: BPUM_1000___gerPD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 192
# Identity: 123/192 (64.1%)
# Similarity: 123/192 (64.1%)
# Gaps: 30/192 (15.6%)
# Score: 377.5
#
#
#=======================================
BSNT_01821___ 1 ATGATCTTTACAGTCATCAACCGCAGCTTGGAAGTCGGGGACATCCGGAT 50
||||..||.||||||.|||||||||.|.|.|| || |||||.
BPUM_1000___g 1 ATGAATTTCACAGTCGTCAACCGCAACATCGA-------GA---CCGGAA 40
BSNT_01821___ 51 GAA------------CGGTGT-GTCCAGTTCCTCCGTTTTCCACATCGGA 87
|.| .|||.| |||| ||.|||.|.||...|||.||.
BPUM_1000___g 41 GCATTAAAGTAGTTGGGGTTTCGTCC---TCTTCCCTATTTATCATTGGG 87
BSNT_01821___ 88 GACACTGAATCCATCTAC--CTGTCTTCTATTTTTGATACACCGCCTGAA 135
|||||.|| .|||.||| .|.||.||.||.||||||||||||||.|||
BPUM_1000___g 88 GACACAGA--TCATGTACAATTATCCTCCATCTTTGATACACCGCCAGAA 135
BSNT_01821___ 136 TCTCTTATTATCGGGCCGTTTGTTCCGATTGCGCCAGAATAA 177
|||.|.||.||.||.|||||||||||..||||.||...||||
BPUM_1000___g 136 TCTTTGATCATTGGCCCGTTTGTTCCTCTTGCACCTCGATAA 177
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