Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01820 and BPUM_0999
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_01820.1.24716.seq
# -bsequence dna-align/BPUM_0999___gerPE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01820-BPUM_0999___gerPE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01820-BPUM_0999___gerPE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01820
# 2: BPUM_0999___gerPE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity: 216/476 (45.4%)
# Similarity: 216/476 (45.4%)
# Gaps: 178/476 (37.4%)
# Score: 479.0
#
#
#=======================================
BSNT_01820 0 -------------------------------------------------- 0
BPUM_0999___g 1 ATGATAAAGCGCACATCTCAAGTGAAGTTCTCGAAGGTGAATTCTGTCGG 50
BSNT_01820 1 --------GTGT--TTCAAGTTGGCGACACAAATGAAATCGATATG---- 36
|||| |||||.|.||.||.|||.|.|| |.||||
BPUM_0999___g 51 GATCTCAAGTGTTGTTCAAATCGGTGATACACAGGA----GCTATGCCCG 96
BSNT_01820 37 --AGTGTAAAAGTATTTGCTGTTCAGCG----------TTCTCTGTCCAC 74
|||| ||.||.||.||||||||||| ||
BPUM_0999___g 97 AAAGTG--AAGGTGTTAGCTGTTCAGCGAACCGTTAGTTT---------- 134
BSNT_01820 75 GTTTTACAATAATGAAGGCTCATTTAACAAAAAGGAGTACCAGATCTTTC 124
||||||....||||||| ||...|||..|.|.|.|.| |||..||
BPUM_0999___g 135 GTTTTATGGGAATGAAG---CAGAAAACTTAGATGCGAA--AGAATTT-- 177
BSNT_01820 125 AGCAGCAGGCAGTG------AAGCCGATT------------CCCGAAACA 156
|.|||| .||||.||| ||.|||..|
BPUM_0999___g 178 --------GAAGTGTATTATGAGCCTATTCCATTGATGTTGCCAGAACGA 219
BSNT_01820 157 GGTGTACA-AAGCGCATTTTGCCACGAGGTGCCGGCTATTTATGTTCGCA 205
..||| || ||..||.||||..||||||..|||.|..|||.|.|||
BPUM_0999___g 220 TCTGT-CAGAACAGCTTTTTATCACGAGAAGCCTGTGATTAAAGTT---- 264
BSNT_01820 206 GCATCAAAA----TTCAAGGGGTGTCCGCCTCTTCTGTTTTACATGCTGG 251
.|.||||.| |..||||||||||..||||.|||||.||.||...|||
BPUM_0999___g 265 TCTTCAATACATGTAGAAGGGGTGTCTTCCTCCTCTGTGTTTCAAATTGG 314
BSNT_01820 252 TTCAGCTTCGCTT-------ATCCGCGGTGATGCGAGAATCAAACATATC 294
.| ||.||..| || ||.|.|||.|||.|.||.|||||.
BPUM_0999___g 315 CT---CTACGTGTGGAATGAAT----GGCGTTGCAAGAGTGAAGCATATT 357
BSNT_01820 295 AGACAG--ATTCAGTC-----------TCCGC---GCTCAC-AATCGCCC 327
.||.|| |||.|| | ||||| .||||| |||.|.||
BPUM_0999___g 358 CGAGAGTTATTTAG-CAACGACGAAAGTCCGCCAAACTCACAAATGGACC 406
BSNT_01820 328 GCCAAGAACATATAA----------- 342
..|..|..|||||.|
BPUM_0999___g 407 TACCTGCGCATATGATGGTGATATGA 432
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