Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01777 and BPUM_0990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_01777___yhjE.1.24716.seq
# -bsequence dna-align/BPUM_0990___yhjE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01777___yhjE-BPUM_0990___yhjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01777___yhjE-BPUM_0990___yhjE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01777___yhjE
# 2: BPUM_0990___yhjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity: 419/658 (63.7%)
# Similarity: 419/658 (63.7%)
# Gaps: 74/658 (11.2%)
# Score: 1210.0
#
#
#=======================================
BSNT_01777___ 1 ATGTTG-GAGCATTTTTTATCCTATTTGACACAAGAACATTTAACTGAAT 49
||| .|.|||||.||..||||||| ||.||.|||.||.|.||...||
BPUM_0990___y 1 ---TTGACATCATTTCTTTCCCTATTT-ACTCATGAAAATATCACATCAT 46
BSNT_01777___ 50 TATTTCAAAGCTATAGGGCTTTCGGTCCGCTCATAGCTGTGCTGCTGCCT 99
|.|||.|.|||||.|.|||.||.||.|||.|..|.||..|..||||.|||
BPUM_0990___y 47 TTTTTGAGAGCTACAAGGCCTTTGGACCGATTGTGGCCATATTGCTCCCT 96
BSNT_01777___ 100 TTAATTGAAGCATTTCTCCCGTTTTTGCCGCTGATCGTGTTTGTGGTGGC 149
|||||.|||||||||||.||||||||.||.||..|.|.|||||..||.||
BPUM_0990___y 97 TTAATAGAAGCATTTCTTCCGTTTTTACCACTTGTTGCGTTTGCTGTAGC 146
BSNT_01777___ 150 GAATACGAACTCGTTTGGCTTGTGGGAAGG------ATTCATCCTGTCTT 193
||||.|.||..|.||.|||.|.|||||||| |||.| ||||..||
BPUM_0990___y 147 GAATGCAAATGCATTCGGCCTTTGGGAAGGCTTTTTATTGA-CCTGGATT 195
BSNT_01777___ 194 GGGCGGGATCAACTGCTGGTTCCATTCTCGTATTTTTGATTG-TCCGTCA 242
|||| |||.|||.||.||.|||||.||.||||| |.|| ||.|..|
BPUM_0990___y 196 -GGCG----CAAGTGCAGGGTCTATTCTTGTCTTTTT-ACTGATCAGAAA 239
BSNT_01777___ 243 ATACGGACAGA-GAAAATTGCTTGGATTTATCCGCAGTCATCCGTCTGTA 291
||..||||||| ||.|| ||||....||||||.||||.|||||.|||.||
BPUM_0990___y 240 ATTTGGACAGATGAGAA-TGCTCAACTTTATCAGCAGGCATCCTTCTATA 288
BSNT_01777___ 292 AGAAAGCTGATGTTATGGGTGGAAAGGCACGGCTTCGGTCCCATGTTTCT 341
|.|||..|||||.|.||||||||.|..|..||.||||||||..|.|||.|
BPUM_0990___y 289 AAAAAATTGATGCTTTGGGTGGAGAAACGGGGATTCGGTCCATTATTTAT 338
BSNT_01777___ 342 TCTGCTTTGTTTTCCATTTACACCGTCAGCCGCAGTGAATGTTGTTGCTG 391
|.|.|||||.|||||.||.|||||.||.||.||.||.||||||||.||.|
BPUM_0990___y 339 TTTACTTTGCTTTCCTTTCACACCCTCTGCTGCCGTCAATGTTGTAGCAG 388
BSNT_01777___ 392 GTTTGTCAAGGATCGGAACGCGGCCGTTTA--TTTTGGC----------G 429
||||.|||||.| ||| ||||||| .
BPUM_0990___y 389 GTTTATCAAGAA---------------TTAGCTTTTGGCAATTCTCATTA 423
BSNT_01777___ 430 GCAGC---CTCGGGGAAGCTTGTCATGATTTTTATGATCAGCTTCATCGG 476
||..| .||.||.|||..|||||||.|.|||||.||.||.||.||.||
BPUM_0990___y 424 GCTACTTTATCTGGTAAGTGTGTCATGCTCTTTATCATTAGTTTTATTGG 473
BSNT_01777___ 477 ATATGATCTGCACGCGCTGATTACACAGCCGATTCGAACGGTCATCGCCG 526
.||||||||....||..|..|||...|.|||.|..|||..||..|.||.|
BPUM_0990___y 474 TTATGATCTTTCTGCTTTAGTTAAGAATCCGTTAAGAAGTGTTTTTGCGG 523
BSNT_01777___ 527 TATTGGTGATCACTGTCTTATGGTATGTCGGCAAAAAG-GTGG---AGCG 572
|..|.||.||..|..|.|||||||||||.|| |||.|| ||.| |..|
BPUM_0990___y 524 TTCTAGTTATTGCGATATTATGGTATGTTGG-AAAGAGAGTAGAAAATAG 572
BSNT_01777___ 573 GT-----ATCTGTATGTAAGAGCCAGTCAGCGTGAGCATGATGGAGGGAG 617
|| ||..|.||| |||.|.||||||.|..|.|||||
BPUM_0990___y 573 GTTAAACATTCGAATG--------AGTAAACGTGAGGACAAAGGAGG--- 611
BSNT_01777___ 618 ACAGTAA- 624
|..|.|
BPUM_0990___y 612 -CTCTTAA 618
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