Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03882 and BPUM_0983
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03882___yrdF.1.24716.seq
# -bsequence dna-align/BPUM_0983___yrdF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03882___yrdF-BPUM_0983___yrdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03882___yrdF-BPUM_0983___yrdF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03882___yrdF
# 2: BPUM_0983___yrdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity: 161/342 (47.1%)
# Similarity: 161/342 (47.1%)
# Gaps: 132/342 (38.6%)
# Score: 396.5
#
#
#=======================================
BSNT_03882___ 1 ATGAGAAAAATAATGATAGATG--------------------GAAGAGAC 30
||||.||||.|...|.|.|||| |||||| |
BPUM_0983___y 1 ATGAAAAAAGTGCAGCTGGATGGCGCATTATGCAGAACACAAGAAGAG-C 49
BSNT_03882___ 31 TT--TGA------AAATATTGAAGTTTTACATGATGTTTTAAAAGATAAA 72
|| ||| |||.| .||||||||
BPUM_0983___y 50 TTCATGACCAACTAAAAA---CAGTTTTAC-------------------- 76
BSNT_03882___ 73 TTAGACTTCCCAGACTACTATGGAGGAAATTTAGACGCTTTATGGGATTG 122
||.|.||.|||||.||.||...||||.|.||.|||.|||||||.||
BPUM_0983___y 77 ----ACCTTCCTGACTATTACGGGAAAAATCTTGATGCTCTATGGGACTG 122
BSNT_03882___ 123 CCTGACAGGGTGGGTGGATTTGCC------GCTTACTTTAGTCTTGATAA 166
..|||||||....||..||.|||| |||.|| .|.|.|.|
BPUM_0983___y 123 TTTGACAGGAGAAGTAAATCTGCCAGTAGAGCTGAC------ATGGGTGA 166
BSNT_03882___ 167 ATTTTGAGTTTAGTAAAAAGTTTTTAGGTTCATACGCT---------AAT 207
|||||||....|||| ||| ||||| .||
BPUM_0983___y 167 ATTTTGACACGAGTA----------AGG-----ACGCTCTTGGAGAGTAT 201
BSNT_03882___ 208 GATG------------TATTAGAAGTTTTACAAGAGGCTCAAGAGGAATT 245
|.|| .|||| |||| ||||.||..||||||||||
BPUM_0983___y 202 GCTGAAAGCGTAAAGCAATTA-----TTTA-AAGAAGCAGAAGAGGAATT 245
BSNT_03882___ 246 AAA-GGAC----------GAGTTTAAAATAATAATAGAATAG 276
||| |||| ||||.|..|||||
BPUM_0983___y 246 AAAGGGACAATTCCAAGTGAGTATTCAATAA----------- 276
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